removing nextflow workflow #601
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| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Unit Testing | |
| on: | |
| push: | |
| branches: [ master ] | |
| pull_request: | |
| branches: [ master ] | |
| jobs: | |
| unit-testing-parse: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.9 | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - name: Setup Graphviz | |
| uses: ts-graphviz/setup-graphviz@v1 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| if [ -f requirements.txt ]; then pip install -r requirements_test.txt; fi | |
| - name: Download Test Data | |
| run: | | |
| cd tests && sh ./get_data.sh | |
| cd .. | |
| - name: Testing | |
| run: | | |
| pytest -vv --cov=massql ./tests/test_parse.py | |
| test-translate: | |
| runs-on: ubuntu-latest | |
| needs: unit-testing-parse | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - uses: ts-graphviz/setup-graphviz@v1 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest pytest-cov | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| if [ -f requirements_test.txt ]; then pip install -r requirements_test.txt; fi | |
| - name: Run test_translate | |
| run: | | |
| pytest -vv --cov=massql ./tests/test_translate.py | |
| test-extraction: | |
| runs-on: ubuntu-latest | |
| needs: unit-testing-parse | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - uses: ts-graphviz/setup-graphviz@v1 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest pytest-cov | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| if [ -f requirements_test.txt ]; then pip install -r requirements_test.txt; fi | |
| - name: Run test_extraction | |
| run: | | |
| pytest -vv --cov=massql ./tests/test_extraction.py | |
| test-visualize: | |
| runs-on: ubuntu-latest | |
| needs: unit-testing-parse | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - uses: ts-graphviz/setup-graphviz@v1 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest pytest-cov | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| if [ -f requirements_test.txt ]; then pip install -r requirements_test.txt; fi | |
| - name: Run test_visualize | |
| run: | | |
| pytest -vv --cov=massql ./tests/test_visualize.py | |
| test-fileloading: | |
| runs-on: ubuntu-latest | |
| needs: unit-testing-parse | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - uses: ts-graphviz/setup-graphviz@v1 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest pytest-cov | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| if [ -f requirements_test.txt ]; then pip install -r requirements_test.txt; fi | |
| - name: Run test_file_loading | |
| run: | | |
| pytest -vv --cov=massql ./tests/test_file_loading.py | |
| test-query: | |
| runs-on: ubuntu-latest | |
| needs: unit-testing-parse | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: 3.9 | |
| - uses: ts-graphviz/setup-graphviz@v1 | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 pytest pytest-cov pytest-xdist | |
| if [ -f requirements.txt ]; then pip install -r requirements.txt; fi | |
| if [ -f requirements_test.txt ]; then pip install -r requirements_test.txt; fi | |
| - name: Run test_query | |
| run: | | |
| pytest -vv --cov=massql ./tests/test_query.py -n 4 |