MOLGENIS implementation for ERDERA
For the MOLGENIS-RD3 implementation for ERDERA, the expressions are located in at ./src/js/*. Files are named using the following format: <table>_<column>_<expressionType>. Expressions are also documented within the scripts an overview is generated (docs/expressions/README.md). Expressions also have unit tests to ensure the functions work as expected (these are run in isolation from the EMX2 instance).
# run unit tests
yarn test
# build and lint docs
yarn docs
Scripts for managing the ERDERA-RD3 instances are stored in the ./erdera/. Many of these scripts require credentials to retrieve or import data. Create a .env file in the project root and create the following variables.
MOLGENIS_HOST=...
MOLGENIS_HOST_TOKEN=...
MOLGENIS_HOST_SCHEMA=...