SAFFARI is designed to implement Snakemake and run 4 different fine-mapping methods (SuSiE, FINEMAP, PolyFun+SuSiE, PolyFun+FINEMAP). Please read thoroughly the WiKi page for more details and how to set-up SAFFARI.
If you end up using this pipeline, please make sure to acknowledge the flagship papers of the softwares implemented:
Please make sure to cite our manuscript when using the SAFFARI pipeline.