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Error with assembleCells preventing the 10x-sc-xcr-vdj pipeline from compeleting

Status: Open.

#2083 In milaboratory/mixcr;

· Khang-LQ opened on Feb 25, 2026

Low cell count

Status: Open.

#2082 In milaboratory/mixcr;

· SirKuikka opened on Feb 23, 2026

Question about long read paramter

Status: Open.

#2078 In milaboratory/mixcr;

· e-antoun opened on Feb 11, 2026

Inconsistent FinalClonotypes between two sequencing platforms on the same sample

Status: Open.

#2076 In milaboratory/mixcr;

· xin-bang opened on Feb 5, 2026

repseqio updates?

Status: Open.

#2075 In milaboratory/mixcr;

· Januaryyiyue opened on Feb 3, 2026

Request for Assistance with 10x 5' V3 GEX Expression Data Processing in mixcr v4.7.0

Status: Open.

#2066 In milaboratory/mixcr;

· ytdai opened on Jan 27, 2026

Why would special letters happen in the results?

Status: Open.

#2062 In milaboratory/mixcr;

· linqy-immune opened on Jan 20, 2026

Error running MiXCR on ONT long read data

Status: Open.

#2052 In milaboratory/mixcr;

· e-antoun opened on Jan 7, 2026

Request for Assistance with 10x 5' V3 VDJ Data Processing in mixcr v4.7.0

Status: Open.

#2050 In milaboratory/mixcr;

· Flynn2059 opened on Jan 4, 2026

Configuring MiXCR for custom Bulk BCR/TCR-seq with structured UMI for full-length VDJ assembly

Status: Open.

#2047 In milaboratory/mixcr;

· Yaxiong293 opened on Dec 24, 2025

Error parsing read "Cannot read field "regions" because "<local6>" is null'" when aligning concatenated single-end amplicon sequences with virtual paired-end input

Status: Open.

#2046 In milaboratory/mixcr;

· biomaticss opened on Dec 24, 2025

exportAlignments -readIds parameter exports numeric index ‘0‘ instead of actual FASTQ read identifiers

Status: Open.

#2045 In milaboratory/mixcr;

· biomaticss opened on Dec 19, 2025