Genomeview merge debugging #1966
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I can't believe this edge case was not caught until now. I hope this works!
The fix to skip a contig if it has a max coverage of 0 worked! But then we still ran into trouble if the max coverage was greater than zero but still not high enough to find inversions.
Another bug I ran into when running more samples - if a contig has a region of sufficient coverage, but that region isn't long enough to be considered, we want to stop looking at that contig to avoid another `TypeError: 'NoneType' object is not iterableTypeError: 'NoneType' object is not iterable` error!
… Lauren Davey for finding this bug and sharing test data :)
…lab/anvio into genomeview-merge-debugging
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PLEASE DON'T MERGE THIS PULL REQUEST WITHOUT COMPLETE CONSENSUS
This is a PR started by @isaacfink21 to save the original genome-view branch, which is in a difficult state due to some ancient git 'force' push commands. This page shall as a medium for discussions related to this merge and relevant updates, involving everyone, especially @matthewlawrenceklein and @isaacfink21 :)