Refactor of doubly nested 2D dynamic programming loops to improve performance#10
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jackwadden wants to merge 4 commits intombreese:masterfrom
Open
Refactor of doubly nested 2D dynamic programming loops to improve performance#10jackwadden wants to merge 4 commits intombreese:masterfrom
jackwadden wants to merge 4 commits intombreese:masterfrom
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…rovides a ~30% speedup in my swalign-dependent code.
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This change refactors the double for loop typical of dynamic programming to save values across loops preventing unnecessary matrix accesses. In my testing, this improved swalign "align" performance by about 15-30%.