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Evolutionary Tree Construction - Small Parsimony, Nearest Neighbor Interchange, UPGMA, Neighbor Joining, Additive Phylogeny

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Advanced Bioinformatics Algorithms

Topics covered:

  • Evolutionary Tree Construction using:
  • Nearest Neighbor Interchange
  • Small and Large Parsimony
  • Unweighted Pair Group Method with Arithmetic Mean (UPGMA)
  • Neighbor Joining Algorithm
  • Additive Phylogeny

These are my solutions to the Bioinformatics IV Course - Molecular Evolution on Coursera. All solutions have been verified to be correct.

Requirements

  • Python 2.7+
  • Numpy
  • NetworkX

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Evolutionary Tree Construction - Small Parsimony, Nearest Neighbor Interchange, UPGMA, Neighbor Joining, Additive Phylogeny

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