Skip to content

♻️ Improve CELLxGENE compatibility #2941

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 22 commits into from
Jul 21, 2025
Merged

♻️ Improve CELLxGENE compatibility #2941

merged 22 commits into from
Jul 21, 2025

Conversation

Zethson
Copy link
Member

@Zethson Zethson commented Jul 15, 2025

  • Fixes saving of example small_dataset3_cellxgene to disk
  • Fixes CELLxGENE Schema 5.3.0 Gene ensembl version from 113 to 110
  • Adds missing columns to AnnData slots that are required by CELLxGENE

Copy link

codecov bot commented Jul 15, 2025

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 92.09%. Comparing base (dcea0f6) to head (aa221d2).
Report is 26 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main    #2941      +/-   ##
==========================================
+ Coverage   91.89%   92.09%   +0.19%     
==========================================
  Files          73       74       +1     
  Lines       11442    11246     -196     
==========================================
- Hits        10515    10357     -158     
+ Misses        927      889      -38     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

Copy link

github-actions bot commented Jul 15, 2025

Deployment URL: https://bd63805f.lamindb.pages.dev

Signed-off-by: Lukas Heumos <[email protected]>
Signed-off-by: Lukas Heumos <[email protected]>
@Zethson Zethson marked this pull request as ready for review July 16, 2025 13:52
Signed-off-by: Lukas Heumos <[email protected]>
Signed-off-by: Lukas Heumos <[email protected]>
Signed-off-by: Lukas Heumos <[email protected]>
Zethson added 4 commits July 17, 2025 19:22
Signed-off-by: Lukas Heumos <[email protected]>
Signed-off-by: Lukas Heumos <[email protected]>
Signed-off-by: Lukas Heumos <[email protected]>
Signed-off-by: Lukas Heumos <[email protected]>
Signed-off-by: Lukas Heumos <[email protected]>
Signed-off-by: Lukas Heumos <[email protected]>
Copy link
Member

@sunnyosun sunnyosun left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

Looks good!

@Zethson Zethson merged commit 370dd76 into main Jul 21, 2025
34 of 47 checks passed
@Zethson Zethson deleted the feature/cellxgene_compat branch July 21, 2025 07:34
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants