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Testing runs #1

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@kunalghosh kunalghosh commented Jun 1, 2020

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shingo-teranishi and others added 30 commits November 7, 2019 13:51
@shingo-teranishi
-1st test
1e0c3f2
@shingo-teranishi
test
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@shingo-teranishi
v1
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@shingo-teranishi
test
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@shingo-teranishi
v4
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@shingo-teranishi
v5
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@shingo-teranishi
v5.1
cb741ea
@shingo-teranishi
V5.1
fc2a65d
added plotting code.
5cd8a52
@kunalghosh
test commit
c3a2ad4
@kunalghosh
Merge branch 'active_learning' of github.com:kunalghosh/Multi_Fidelit…
ad4617b 
…y_Prediction_GP into active_learning
@kunalghosh
Added an extra field to the config, random_seed for the different runs.
32e90fe
@kunalghosh
Added .dat config files and slurm shells scripts.
54ed3c8
@kunalghosh
Added random seeds wherever applicable.
01a305d
@kunalghosh
Added horizontal bars on the error bars.
b924e51
@kunalghosh
Added a gitignore file.
74a08b8
@kunalghosh
Code to resume from previous run.
1380418
@kunalghosh
resolved merge conflict
0cc29d3
@kunalghosh
Code to plot best strategy against worst. Figure 1
22bfb56
@kunalghosh
Added code to fit a curve to B and D datapoints.
517000f
@kunalghosh
Added code to fit a curve to data and also draw vertical and horizont…
6202cbc 
…al lines indicating data size savings.
@kunalghosh
Code for generating data savings plot.
f5b22a3
@kunalghosh
Fix a bug in __main__.py which prevented the code from running from f…
48e30b4 
…resh start i.e. nothing to resume from.
@kunalghosh
Changed the comparison back to D and random (A) instead of B. Since r…
b2ecf7c 
…andom is the correct baseline.
@kunalghosh
Removed account name when running under triton.
aefdca0
@kunalghosh
fixing merge conflict.
799ebe7
@kunalghosh
code resumes but loading gpr hyperparameters fails, consequently the …
34c3efe 
…subsequent indices are wrong.
@kunalghosh
experimental changes to figure out loading GPR hyperparams without re…
c65b218 
…training GPR. Moment X_train_ is loaded the Kernel is set to none :(
@kunalghosh
Commented out experimental code and debugger traces.
ce68789
@kunalghosh
commented out loading saved hyperparameters, as it did not give same …
e663b12 
…results on gpr.fit
kunalghosh and others added 30 commits April 27, 2022 13:45
@kunalghosh
If clustering in strategy D fails, just pick the most uncertain indices.
292196f
@kunalghosh
Strategy D falls back to strategy B (no clustering) if number of mole…
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…cules less than needed cluster centers.
@kunalghosh
Fix formatting in time logger
6b4508e
@kunalghosh
Added timing code.
25fd5b2
@kunalghosh
Updated notebooks
3554689
@kunalghosh
Formatting changes
2acc91e
@kunalghosh
Added two new arguments to config only used for new acquisition strat…
8732a71 
…egies
@kunalghosh
Formatting changes
e824238
@kunalghosh
Passing conf to acq_fn and also added new acquisition function
407d96c
@kunalghosh
Latest strategy cannot work if ranges are not specified, added tests …
5c1fc01 
…for that
@kunalghosh
Rename config variables to what is used elsewhere
4879651
@kunalghosh
Fixed an assertion error and also gpr.predict with std=False returns …
1e5a3ae 
…only one value
@kunalghosh
Fixing assert, both cannot be None
0dd6404
@kunalghosh
np.where returns a tuple with a np.array inside, extracting the array
733ef02
@kunalghosh
K was float, casting it to int
0673f96
@kunalghosh
Need to outptu y_train also to keep the interface consistent
ea176c8
@kunalghosh
Fixing indexing issue
ed7cf18
@kunalghosh
Fixing bug, updating variables since these are returned by the acq_fn…
180507d 
… function
@kunalghosh
K should be prediction_set_size
62e7c45
@kunalghosh
Fix Bug: Index once picked should not be picked again
73a3f2a
@kunalghosh
Added new acquisition function
b490cb6
@kunalghosh
If there are not enough indices to randomly pick from add all
777c870
@kunalghosh
Initial commit of strategy J
154abfc
@kunalghosh
idxs_above_lowlimit are actual idxs and not a mask fixed a bug
10ced16
@kunalghosh
Update README.md
9a8c389
@kunalghosh
Create README.md
061bed4
@kunalghosh
Update README.md
8ccdb04
@kunalghosh
Update README.md
838a5e2
@kunalghosh
Added citation information
fcc4091
@kunalghosh
Formatting citation information
5cfd59c
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3 participants

@kunalghosh @shingo-teranishi