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@jyyulab

Yu Laboratory @ St. Jude

Yu Lab in the Department of Computational Biology at St. Jude Children's Research Hospital

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  1. NetBID NetBID Public

    Data-driven Network-based Bayesian Inference of Drivers

    R 44 9

  2. SJARACNe SJARACNe Public

    Scalable Tool for Gene Network Reverse Engineering

    C++ 24 16

  3. NetBID_shiny NetBID_shiny Public

    NetBID shiny app

    R 2

  4. scMINER scMINER Public

    Single-cell Mutual Information-based Network Engineering Ranger

    R 20 6

Repositories

Showing 10 of 21 repositories
  • bulkRNAseq_quantification_pipeline Public

    Quantification Pipelines on RNA-Seq Data

    jyyulab/bulkRNAseq_quantification_pipeline’s past year of commit activity
    Perl 0 MIT 0 0 2 Updated Nov 21, 2025
  • SJARACNe Public

    Scalable Tool for Gene Network Reverse Engineering

    jyyulab/SJARACNe’s past year of commit activity
    C++ 24 16 5 0 Updated Nov 6, 2025
  • MICA Public

    Mutual Information-based Non-linear Clustering Analysis

    jyyulab/MICA’s past year of commit activity
    Python 2 Apache-2.0 3 2 2 Updated Oct 29, 2025
  • SINBA Public

    SINBA: Synergy Inference by Data-driven Network-Based Bayesian Analysis.

    jyyulab/SINBA’s past year of commit activity
    R 0 Apache-2.0 0 0 0 Updated Oct 15, 2025
  • Spotiphy Public

    Spot pseudo-Imager on top of histology

    jyyulab/Spotiphy’s past year of commit activity
    Jupyter Notebook 42 Apache-2.0 8 7 0 Updated Oct 3, 2025
  • scMINER Public

    Single-cell Mutual Information-based Network Engineering Ranger

    jyyulab/scMINER’s past year of commit activity
    R 20 Apache-2.0 6 0 0 Updated Aug 28, 2025
  • NetBID Public

    Data-driven Network-based Bayesian Inference of Drivers

    jyyulab/NetBID’s past year of commit activity
    R 44 Apache-2.0 9 1 0 Updated Aug 18, 2025
  • scMINER_documentation Public

    This a the full documentation of scMINER R package.

    jyyulab/scMINER_documentation’s past year of commit activity
    TeX 0 0 0 0 Updated Aug 13, 2025
  • redeconv Public
    jyyulab/redeconv’s past year of commit activity
    Python 19 Apache-2.0 0 2 0 Updated Apr 7, 2025
  • NetBID_shiny Public

    NetBID shiny app

    jyyulab/NetBID_shiny’s past year of commit activity
    R 2 Apache-2.0 0 0 0 Updated Jan 20, 2025
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