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jeromelecoq/README.md

Jérôme Lecoq

Associate Investigator at the Allen Institute for Neural Dynamics

I lead OpenScope, an open platform that turns community-proposed questions into standardized, large-scale neurophysiology experiments.

I work at the intersection of systems neuroscience, neural dynamics, two-photon microscopy, Neuropixels, computational imaging, and open science. Most of my current code and data work lives in collaborative Allen Institute repositories.

Current work

  • OpenScope - Community-designed neuroscience at scale, from experimental planning through open data release.
  • OpenScope Databook - Reproducible Python notebooks for exploring and analyzing NWB datasets on DANDI.
  • OpenScope Predictive Processing Community - Open documentation, experiments, and shared analysis for testing models of predictive processing.

Selected software

Research links

Allen Institute profile | ORCID | Google Scholar | LinkedIn

Pinned Loading

  1. AllenNeuralDynamics/openscope-community-predictive-processing AllenNeuralDynamics/openscope-community-predictive-processing Public

    This repository serves as a hub for community-driven contributions, documentation, and project tracking of the OpenScope Predictive Processing Community project.

    Python 25 13

  2. AllenInstitute/openscope_databook AllenInstitute/openscope_databook Public

    OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈

    Python 75 31

  3. AllenInstitute/deepinterpolation AllenInstitute/deepinterpolation Public

    Python 224 54

  4. AllenNeuralDynamics/ophys-slap2-analysis AllenNeuralDynamics/ophys-slap2-analysis Public

    Data reduction, preprocessing, and analysis for SLAP2 microscopes

    Jupyter Notebook 3 2

  5. AllenInstitute/visual_behavior_analysis AllenInstitute/visual_behavior_analysis Public

    Python package for analyzing behavioral data for Brain Observatory: Visual Behavior

    Jupyter Notebook 26 8

  6. datajoint/compress-multiphoton datajoint/compress-multiphoton Public

    Compression for multiphoton calcium imaging movies and stacks

    Jupyter Notebook 6 9