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Achievement: Galaxy BrainAchievement: Pull Sharkx3Achievement: StarstruckAchievement: YOLOAchievement: Quickdraw

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jamesjiadazhan/README.md

Hi there, I'm James Zhan 👋

About Me

I'm a passionate researcher with a love for bioinformatics, including computational metabolomics. I'm always looking for hard and right challenges to tackle.

🔧 Technologies & Tools

  • Languages: R, Python

🛠️ Projects

Here are a few projects I've worked on:

Project 1: dietaryindex

Dietaryindex is an R package that provides user-friendly, streamlined methods for calculating index-based dietary patterns (dietary index) for NHANES and many other nutritional assessment, including ASA24, DHQ3, and Block FFQ.

Project 2: MetaboIndex

MetaboIndex provides tools for metabolomics-based dietary inflammation scoring (The Dietary Metabolite Inflammatory Index) and reference standardization quantification workflows. The Dietary Metabolite Inflammatory Index offers a complementary approach to measure inflammation-related dietary intake using untargeted metabolomics in addition to self-reporting dietary intake.

Project 3: MSMICA

MSMICA (Mass Spectrometry Metabolomics Identification Connection Algorithm) is an R package that uses experimentally optimized parameters — including adduct formations, adduct correlations, enzyme-based precursor-product correlations, and isotope correlations — for metabolite identification using a Bayesian framework. It typically generates 2000-4000 metabolite identifications with mostly unique features assigned.

🤝 Let's Connect

Feel free to reach out if you want to collaborate on a project, need help with something, or just want to connect.

Thanks for visiting my profile! Have a great day! 😄

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  1. dietaryindex dietaryindex Public

    R Package for Calculating Healthy Eating Index-2020 (HEI2020), Alternative Healthy Eating Index (AHEI), Dietary Approaches to Stop Hypertension (DASH), Mediterranean Diet (MED), Dietary Inflammatio…

    R 164 33

  2. MSMICA MSMICA Public

    Mass Spectrometry Metabolomics Identification Connection Algorithm

    R 2 1

  3. MetaboIndex MetaboIndex Public

    Calculate metabolomics-based dietary index

    R 1

  4. MetaboCoreUtilsAdduct MetaboCoreUtilsAdduct Public

    Forked from rformassspectrometry/MetaboCoreUtils

    Core utilities for metabolomics, especially adduct mass calculation.

    R

  5. ReviewCopilot ReviewCopilot Public

    This is the open-source code repository for ReviewCopilot, an AI screener for systematic reviews

    Python 2 1