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docs: update conformer selection folmsbee docs#150

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docs: update conformer selection folmsbee docs#150
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docs/conformers-folmsbee

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@lwehrhan

@lwehrhan lwehrhan commented Jul 3, 2026

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update conformer selection folmsbee docs

Description

Update the conformer selection docs page to describe the folmsbee dataset. Thid includes updates to the dataset section, example images and literature reference.

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github-actions Bot commented Jul 3, 2026

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Coverage

Coverage Report
FileStmtsMissCoverMissing
src/mlipaudit
   __init__.py20100% 
   benchmark.py77790%146, 165, 231, 237–238, 248, 262
   exceptions.py20100% 
   io.py1002575%117, 121, 146–150, 152, 154, 171–172, 174–175, 192–193, 195, 213–221
   io_helpers.py520100% 
   run_mode.py50100% 
   scoring.py29775%101–102, 104, 107, 111–112, 114
src/mlipaudit/benchmarks
   __init__.py290100% 
src/mlipaudit/benchmarks/bond_length_distribution
   bond_length_distribution.py95396%208, 211, 276
src/mlipaudit/benchmarks/conformer_selection
   conformer_selection.py132596%249, 252, 295, 300, 340
src/mlipaudit/benchmarks/dihedral_scan
   dihedral_scan.py116595%222, 225, 259, 262, 304
src/mlipaudit/benchmarks/folding_stability
   folding_stability.py106496%212, 270, 275, 339
   helpers.py350100% 
src/mlipaudit/benchmarks/noncovalent_interactions
   noncovalent_interactions.py1681094%245, 248, 272, 283, 407, 424, 441, 525–527
src/mlipaudit/benchmarks/nudged_elastic_band
   engine.py1269425%62, 81–82, 84–89, 91, 93, 95–96, 98–99, 101–103, 112–113, 115–116, 120–121, 123, 130, 132, 134–136, 138–139, 141, 143–145, 147–151, 153, 159–163, 165–167, 169–171, 173–175, 177–180, 182, 185, 189–190, 192, 194–195, 197, 201–202, 205–210, 212–213, 229, 234, 236–238, 240, 242–243, 246–247, 253, 256–257, 261–262, 267
   nudged_elastic_band.py121695%290–291, 298, 310, 316, 323
src/mlipaudit/benchmarks/reactivity
   reactivity.py117397%239–240, 272
src/mlipaudit/benchmarks/reference_geometry_stability
   reference_geometry_stability.py122397%233, 305, 328
src/mlipaudit/benchmarks/ring_planarity
   ring_planarity.py99693%229, 232, 264, 267–268, 287
src/mlipaudit/benchmarks/sampling
   helpers.py64493%46, 67, 97, 129
   sampling.py2251095%303, 344, 385, 388–390, 440, 707, 825–826
src/mlipaudit/benchmarks/scaling
   scaling.py1033466%128–130, 138–139, 141–144, 154–156, 193–198, 201–203, 209–210, 212–213, 215–216, 219–220, 222, 243, 252, 271, 284
src/mlipaudit/benchmarks/solvent_radial_distribution
   solvent_radial_distribution.py101892%189–190, 192, 231, 236–237, 302, 325
src/mlipaudit/benchmarks/stability
   stability.py1501888%166, 169, 201–202, 205–206, 208, 210, 213, 215, 431–432, 442, 478, 487, 522, 537, 548
src/mlipaudit/benchmarks/tautomers
   tautomers.py92594%182, 208, 211–212, 231
src/mlipaudit/benchmarks/water_radial_distribution
   water_radial_distribution.py94297%186, 268
src/mlipaudit/ui
   __init__.py160100% 
   bond_length_distribution.py581181%89–90, 95–96, 141–142, 147, 150, 176, 188, 192
   conformer_selection.py100793%133–134, 139–140, 195, 320, 324
   dihedral_scan.py1151289%141–142, 147–148, 259–260, 302, 313, 353, 355, 365, 369
   folding_stability.py96792%44, 226–227, 232–233, 406, 410
   leaderboard.py801087%67, 74, 78, 85, 287–289, 291, 293, 303
   noncovalent_interactions.py158994%205–206, 211–212, 401, 406, 443, 466, 470
   nudged_elastic_band.py553929%42–46, 50–51, 53, 66, 68, 75, 82, 89–90, 93, 97–99, 101, 103–105, 107–109, 111–113, 115, 117, 119, 121–122, 124, 135, 137, 149, 159, 163
   page_wrapper.py14285%36, 46
   reactivity.py59689%96–97, 102–103, 173, 177
   reference_geometry_stability.py66986%62, 131–132, 137–138, 199, 226, 236, 240
   ring_planarity.py56983%71–72, 77–78, 123–124, 160, 170, 174
   sampling.py87989%85, 129–130, 135–136, 166, 234, 265, 269
   scaling.py52688%135–136, 147–148, 162, 166
   solvent_radial_distribution.py832075%117–118, 123–124, 150, 156, 162–166, 168–169, 175, 178, 190, 197, 199, 211, 215
   stability.py601083%106–107, 112–113, 134–135, 138, 148, 177, 181
   tautomers.py62690%82–83, 88–89, 194, 198
   utils.py1061982%69, 73–74, 130, 192–195, 201, 251, 269–270, 273–274, 277, 287–289, 291
   water_radial_distribution.py98693%132–133, 138–139, 279, 283
src/mlipaudit/utils
   __init__.py40100% 
   inference.py27774%54–56, 65–66, 69, 72
   simulation.py55492%139, 177–179
   stability.py31583%61, 68, 92, 99, 103
   trajectory_helpers.py340100% 
   unallowed_elements.py100100% 
TOTAL394447288% 

Tests Skipped Failures Errors Time
128 0 💤 0 ❌ 0 🔥 12.881s ⏱️

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