docker-metaphlan2 2.7.8

MetaPhlAn docker image based on Miniconda3

MetaPhlAn 2: Metagenomic Phylogenetic Analysis

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea, Eukaryotes and Viruses) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.

Base Image

• Conda conda/miniconda2-centos7

Installed

• MetaPhlAn (2.7.8)

Settings

VOLUME /data/
WORKDIR /data/

Running

docker run -it -v $(pwd):/data infotechsoft/metaphlan2 bash
# metaphlan2.py metagenome.fastq --input_type fastq > profiled_metagenome.txt

Maintainer