Bioconductor packages metadata importer

This program is a metadata importer for Bioconductor packages. It provides a set of functions to import metadata from Bioconductor packages, including package information, citation information, and other package metadata.

Set-up and Usage

1. Install dependencies

   pip3 install -r requirements.txt

2. Execute the importer

   python3 main.py -l=info 

• -l or --loglevel specifies the log level.

Configuration

Environment variables

Name	Description	Default	Notes

Name	Description	Default	Notes
MONGO_HOST	Host of database where output will be pushed	localhost
MONGO_PORT	Port of database where output will be pushed	27017
MONGO_USER	User of database where output will be pushed
MONGO_PASS	Password of database where output will be pushed
MONGO_AUTH_SRC	Authentication source of database where output will be pushed	admin
MONGO_DB	Name of database where output will be pushed	observatory
ALAMBIQUE	Name of database where output will be pushed	alambique