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Consolidation of chr prefix naming #323

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Consolidation of chr prefix naming #323

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4 changes: 2 additions & 2 deletions R/compIdent_bamRcnt.R
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Original file line number Diff line number Diff line change
Expand Up @@ -37,11 +37,11 @@ compIdent_bamRcnt <- function(bamfile, genome, target=NULL, debug=FALSE)
# Target locations must conform to the bam files being read in, create
# two versions one with "chr1" and the other with "1" and use whichever is
# appropriate
target.chr <- target
if(any(grepl("chr", target$chr)))
{
target$chr <- gsub("chr", "", target$chr)
} else {
target.chr <- target
target.chr$chr <- paste0("chr", target$chr)
}

Expand Down Expand Up @@ -115,4 +115,4 @@ compIdent_bamRcnt <- function(bamfile, genome, target=NULL, debug=FALSE)
"var", "name")]

return(x)
}
}