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@yuragal yuragal commented Dec 29, 2016

Without this flag, processing of input files containing filtered reads than could have no pair, result in error in GSNAP call. This error is similar to this one.

Without this flag, processing of input files containing filtered reads than could have no pair, result in error in GSNAP call. This error is similar to [this one](https://www.biostars.org/p/203212/).
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