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@nsoranzo nsoranzo commented Dec 1, 2025

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caused by the removal of the ``file_name`` property in
galaxyproject/galaxy#16783 .

Fix these errors:

```
Parameter 'x': requires a value, but no legal values defined, Parameter 'y': requires a value, but no legal values defined
```

```
Parameter 'gene_id': requires a value, but no legal values defined
```
to fix `Mutex creation failed` when importing `later`,
xref: r-lib/later#63

cummeRbund 2.24.0 is the first version that doesn't (indirectly)
depend on `r-later` and works correctly.
@nsoranzo nsoranzo force-pushed the fix_cummeRbund_and_linting_errors branch 2 times, most recently from 2dd7aa5 to 38e5d6c Compare December 2, 2025 11:46
@nsoranzo nsoranzo force-pushed the fix_cummeRbund_and_linting_errors branch from 38e5d6c to ff8ab28 Compare December 2, 2025 12:13
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nsoranzo commented Dec 2, 2025

Green! This should fix the weekly CI tests.

<output name="output" ftype="txt">
<assert_contents><has_text text="cummeRbund finished" /></assert_contents>
<discovered_dataset designation="maplot-0" ftype="png" file="maplot.png" />
<discovered_dataset designation="maplot-0" ftype="png" file="maplot.png" compare="sim_size" />
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you can use here the more stringent img-comparison asserts

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I think I've tried that and the difference was very high for reasons I don't understand.

@nsoranzo nsoranzo force-pushed the fix_cummeRbund_and_linting_errors branch from f1d5f3e to f0984b8 Compare December 12, 2025 12:46
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2 participants