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yipy0005 wants to merge 2 commits intoforlilab:developfrom
Chemical-Biology-STP:develop
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Develop#398
yipy0005 wants to merge 2 commits intoforlilab:developfrom
Chemical-Biology-STP:develop

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@yipy0005 yipy0005 commented Oct 6, 2025

added box_only option and instructions in the readme on how to use that

…eceptor.py

- Reorganize imports in alphabetical order and group by type
- Add box-only mode functionality for grid box generation
- Improve code formatting and add consistent spacing
- No functional changes to existing behavior
- Document new --box_only mode for generating docking boxes without receptor input
- Include usage examples for explicit center/size and ligand enveloping methods
- Add notes about limitations and incompatible options
- Provide clear command-line examples for common use cases
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