merge upstream #2
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* Add codec categories in doc contents * Improve contents structure * Put registry in API * Add release note * Move pcodec
updates: - [github.com/astral-sh/ruff-pre-commit: v0.6.2 → v0.6.3](astral-sh/ruff-pre-commit@v0.6.2...v0.6.3) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
updates: - [github.com/astral-sh/ruff-pre-commit: v0.6.3 → v0.6.4](astral-sh/ruff-pre-commit@v0.6.3...v0.6.4) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Bumps [pypa/cibuildwheel](https://github.com/pypa/cibuildwheel) from 2.20.0 to 2.21.0. - [Release notes](https://github.com/pypa/cibuildwheel/releases) - [Changelog](https://github.com/pypa/cibuildwheel/blob/main/docs/changelog.md) - [Commits](pypa/cibuildwheel@v2.20.0...v2.21.0) --- updated-dependencies: - dependency-name: pypa/cibuildwheel dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
updates: - [github.com/astral-sh/ruff-pre-commit: v0.6.4 → v0.6.5](astral-sh/ruff-pre-commit@v0.6.4...v0.6.5) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Bumps [pypa/cibuildwheel](https://github.com/pypa/cibuildwheel) from 2.21.0 to 2.21.1. - [Release notes](https://github.com/pypa/cibuildwheel/releases) - [Changelog](https://github.com/pypa/cibuildwheel/blob/main/docs/changelog.md) - [Commits](pypa/cibuildwheel@v2.21.0...v2.21.1) --- updated-dependencies: - dependency-name: pypa/cibuildwheel dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
updates: - [github.com/astral-sh/ruff-pre-commit: v0.6.5 → v0.6.7](astral-sh/ruff-pre-commit@v0.6.5...v0.6.7) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
updates: - [github.com/astral-sh/ruff-pre-commit: v0.6.7 → v0.6.8](astral-sh/ruff-pre-commit@v0.6.7...v0.6.8) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Test on Python 3.13 Add python-rc Try label Try again * Only install pcodec on <3.13 * Update Python 3.13.0 to release version Co-authored-by: jakirkham <[email protected]> --------- Co-authored-by: jakirkham <[email protected]>
Bumps [pypa/cibuildwheel](https://github.com/pypa/cibuildwheel) from 2.21.1 to 2.21.2. - [Release notes](https://github.com/pypa/cibuildwheel/releases) - [Changelog](https://github.com/pypa/cibuildwheel/blob/main/docs/changelog.md) - [Commits](pypa/cibuildwheel@v2.21.1...v2.21.2) --- updated-dependencies: - dependency-name: pypa/cibuildwheel dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
* chore: update pre-commit hooks updates: - [github.com/astral-sh/ruff-pre-commit: v0.6.8 → v0.6.9](astral-sh/ruff-pre-commit@v0.6.8...v0.6.9) * Fix pre-commit config --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: David Stansby <[email protected]>
* Update c-blosc to v1.26.1 * Add changelog entry
* Apply repo-review rule PP304
PP304: Sets the log level in pytest
log_cli_level should be set. This will allow logs to be displayed on failures.
* Apply repo-review rule PP305
PP305: Specifies xfail_strict
xfail_strict should be set. You can manually specify if a check should be strict when setting each xfail.
* Apply repo-review rules PP306, PP307, PP308
PP306: Specifies strict config
--strict-config should be in addopts = [...]. This forces an error if a config setting is misspelled.
PP307: Specifies strict markers
--strict-markers should be in addopts = [...]. This forces all markers to be specified in config, avoiding misspellings.
PP308: Specifies useful pytest summary
An explicit summary flag like -ra should be in addopts = [...] (print summary of all fails/errors).
* Apply ruff/pygrep-hooks rule PGH004
PGH004 Use specific rule codes when using `noqa`
PGH004 Use specific rule codes when using `ruff: noqa`
* Apply and enforce ruff rules (RUF)
Apply ruff rule RUF012:
RUF012 Mutable class attributes should be annotated with `typing.ClassVar`
Disable ruff rule RUF001
* Apply and enforce ruff/flake8-bugbear rules (B)
B007 Loop control variable not used within loop body
B028 No explicit `stacklevel` keyword argument found
B904 Within an `except` clause, raise exceptions with `raise ... from err` or
`raise ... from None` to distinguish them from errors in exception handling
B905 `zip()` without an explicit `strict=` parameter
Co-authored-by: David Stansby <[email protected]>
* Apply and enforce ruff/isort rules (I)
* Apply repo-review rule PC100
PC100: Has pre-commit-hooks
Must have https://github.com/pre-commit/pre-commit-hooks repo in .pre-commit-config.yaml
* Enforce repo-review rules
* Apply ruff/flake8-implicit-str-concat rules (ISC)
ISC001 Implicitly concatenated string literals on one line
ISC003 Explicitly concatenated string should be implicitly concatenated
* Apply ruff/refurb rules (FURB)
FURB163 Prefer `math.log10`/`math.log2` over `math.log` with a redundant base
* Fix DeprecationWarning
'pkgutil.find_loader' is deprecated and slated for removal
in Python 3.14; use importlib.util.find_spec() instead
---------
Co-authored-by: David Stansby <[email protected]>
* Deprecate a couple ruff/pyupgrade rules (UP) * Enforce ruff/flake8-pytest-style rules (PT) * Apply ruff/flake8-pytest-style rule PT006 PT006 Wrong type passed to first argument of `@pytest.mark.parametrize`; expected `tuple` * Apply ruff/flake8-pytest-style rule PT007 PT007 Wrong values type in `@pytest.mark.parametrize` expected `list` of `tuple` * Enforce ruff/flake8-bugbear rules (B) * Apply ruff/flake8-executable rule EXE001 EXE001 Shebang is present but file is not executable * Enforce ruff/pygrep-hooks rules (PGH) * Apply ruff/flake8-simplify rule SIM102 SIM102 Use a single `if` statement instead of nested `if` statements * Apply ruff/flake8-simplify rule SIM105 SIM105 Use `contextlib.suppress(ImportError)` instead of `try`-`except`-`pass` * Apply ruff/flake8-raise rule RSE102 RSE102 Unnecessary parentheses on raised exception * Enforce ruff/flake8-raise rules (RSE)
* Use inplace subtract in Delta encoding * ruff reformatting * Add a comment explaining use of `subtract` for speed --------- Co-authored-by: David Stansby <[email protected]>
* Update optimized `Delta` codec for `bool` Previously `bool` just worked with `Delta`. However this was not actually tested. The optimized version switched to `np.subtract` for in-place computation, which works for other types. Though `bool` needs special handling. Fortunately this can be done with `np.not_equal`, which has the same behavior. Also include a test for `bool` data to make sure this is handled correctly going forward. * Simplify type check This is a bit more succinct and gets to the core point. Namely `arr.dtype` determines this code path. Also comparing directly to `bool` works here. It is a bit faster as well since we need not construct an `np.dtype` object. * Drop extraneous `0`s
updates: - [github.com/pre-commit/pre-commit-hooks: v4.6.0 → v5.0.0](pre-commit/pre-commit-hooks@v4.6.0...v5.0.0) - [github.com/scientific-python/cookie: 2024.04.23 → 2024.08.19](scientific-python/cookie@2024.04.23...2024.08.19) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
* Apply ruff/flake8-pie rule PIE808 PIE808 Unnecessary `start` argument in `range` * Enforce ruff/flake8-pie rules (PIE)
Bumps [pypa/cibuildwheel](https://github.com/pypa/cibuildwheel) from 2.21.2 to 2.21.3. - [Release notes](https://github.com/pypa/cibuildwheel/releases) - [Changelog](https://github.com/pypa/cibuildwheel/blob/main/docs/changelog.md) - [Commits](pypa/cibuildwheel@v2.21.2...v2.21.3) --- updated-dependencies: - dependency-name: pypa/cibuildwheel dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
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[Description of PR]
TODO: