17.05

What's Changed

💡Changes related to technical debt

• Transform the Homepage of SCXA by @ke4 in #512
• [Chore] #516 - Transform Download page from JSP to ThymeLeaf by @ke4 in #521
• [Chore] #514 - Convert HCA landing page by @ke4 in #522
• [Chore] #517 - Transform experiments list page by @ke4 in #524
• [Chore] #513 - Replace JSP views with Thymeleaf templates for experiments by @ke4 in #525
• [Chore] #515 - Transform cell type wheel experiment heatmap page by @ke4 in #526
• [Chore] #519 - Transform static pages by @ke4 in #527
• [Chore] #518 - Transform search results page by @ke4 in #528
• [Chore] #520 - Transform error page and error handling by @ke4 in #529

🐞 Bug Fixes

• E-ANND experiment download files missing by @lingyun1010 in #540

💡 Other Changes

• Update front end components from security fix and tsne plot update by @lingyun1010 in #504
• Add single cell to download ftp description by @lingyun1010 in #543

Full Changelog: v16.0.1...17.05

v16.0.1

What's Changed

🎉 Exciting New Features

• [Feature] Add natural sorting order to clustered marker genes for visualising them in our Heatmap component by @ke4 in #458
• Refactor experiment page bundle by @lingyun1010 in #490
• Set HttpOnly argument for cookies true in the HTTP request headers by @ke4 in #497

🐞 Bug Fixes

• bugfix/update-cell-type-marker-genes-endpoint-to-accept-slash-in-the-celltype by @upendrakumbham in #475
• Fix eslint version mismatch by @lingyun1010 in #481
• Upgrade scxa-marker-gene-heatmap versions by @lingyun1010 in #483
• Refactor experiment's external resource handling by @ke4 in #486
• Fix ordering of the cluster labels in the marker gene heat map by @ke4 in #488
• Bugfix/make the inferred cell type options dynamic shown or disabled in marker gene heatmap dropdown menu by @upendrakumbham in #482
• Fix the intermittently failing tests in SCXA by @ke4 in #491

💡 Other Changes

• Bugfix eslint version mismatch by @lingyun1010 in #485

Full Changelog: v16.0.0...v16.0.1

v16.0.0 - annData Release

What's Changed

⭐ New Features

• Add experiment design loading to our local env by @ke4 in #366
• Improve build endpoint in SCXA by @ke4 in #376
• Improve Anndata experiment page appearance by @ke4 in #397
• Modify the summary section's margin/padding in case of Anndata experiment by @ke4 in #402
• Integrate scxa-faceted-search-result to move the anndata icon to the title column by @lingyun1010 in #405
• Add analysis description text for supplementary info in case of anndata by @ke4 in #407
• anndata icon and title on scxa gene search and experiment table pages by @lingyun1010 in #419
• Integrate ovary and testis organ anatomogram by @lingyun1010 in #417
• Update publication list on the home page with the latest one by @ke4 in #429
• Update latest publication date by @ke4 in #433
• Add external data hyperlink to help page by @lingyun1010 in #459
• Update atlas-experiment-table package for anndata by @lingyun1010 in #406

🐞 Bug Fixes

• Fix the tsne plot option dropdown menu label issue by @lingyun1010 in #360
• Replace lodash function with JS function by @lingyun1010 in #370
• Fix failing unit tests by @ke4 in #386
• Update SQL for non-priority case in cell plot by @lingyun1010 in #384
• Fix the title of the Cell Type Wheel Heatmap by @KhalilBeldi in #396
• Add consistency between cell plots tab and marker genes tab by @lingyun1010 in #388
• Clean code in SingleCellBaselineExperiment by @ke4 in #423
• Fix processing search data for cell type wheel by @ke4 in #428
• Add species when redirect to metadata search by @ke4 in #434
• Update scxa-gene-search-form and scxa-cell-type-wheel-heatmap to latest by @ke4 in #435
• Set species dropdown default value to Any by @ke4 in #437
• Decouple the experiment type with external links by @lingyun1010 in #427
• Render big dataset with Highcharts in the Single Cell web app by @ke4 in #440
• Change initial value for 'Species' from 'Any' to an empty value ('') by @ke4 in #443
• Fix search button not working after an initial metadata search by @lingyun1010 in #446
• Filter species metadata cell type wheel search on ogranism field by @lingyun1010 in #442
• Get expression unit from the DB for Cell plots tab / Gene Expression part by @ke4 in #449
• Update tsne plot package version and ks options by @lingyun1010 in #451
• Fix species filter is getting ignored in the metadata search by @upendrakumbham in #448
• Experiment unit from db for marker genes by @ke4 in #450
• Integrate inferred cell type and cluster marker gene heatmap by @lingyun1010 in #452
• Add more experiment to anatomogram black list by @lingyun1010 in #457
• Add more experiment accessions to the anatomogram backlist by @ke4 in #463
• Replace FlyBase gene search example to FBgn0003062 by @ke4 in #464

💡Other Changes

• Improve the build-and-deploy-webapp shell script in SCXA by @ke4 in #377
• Experiment Design backend functionality by @haideriqbal in #324
• Update tsne-plot package by @lingyun1010 in #364
• Refactor organism part endpoint by @ke4 in #352
• Refactor cell types endpoint by @ke4 in #353
• Add no build flag to local deployment by @ke4 in #414

❤️ New Contributors

• @KhalilBeldi made their first contribution in #396

Full Changelog: vzenodo...v16.0.0

Zenodo DOI release

This is a release to create a DOI in Zenodo for the EA update paper 2023 -@ngeorgeebi