Auto MIB and ptychographic submitter

[deBoer1969]

Here is some code that that can be used with automatic data collection or a stand alone session. The code once run will ask for the session information and watch the folder location auto submitting MIB conversion and then run a further ptycho reconstruction on the converted mib data.

(i forgot to add a timer to kill the script...it will run forever if not stopped)

Example data to test on /dls/e02/data/2025/cm40603-5/Merlin/C1_Au_GCN_FT

[fallars]

Hi Josh,

before I can accept this change could you refactor the code:
change the format from a notebook into a python script and then have a separate notebook import the python script. This will make easier to read the code.
where you have used functions from elsewhere perform imports instead. this should greatly reduce the length of the code.
remove ASCII art from the script

This might require further changes but I cannot tell until the above has occurred.

fred

[deBoer1969]

Hi, That all sounds quite reasonable. I will try and take a look at doing this next week. Best, Josh

…

________________________________ From: fallars ***@***.***> Sent: 19 February 2026 13:58 To: ePSIC-DLS/epsic_tools ***@***.***> Cc: Joshua De Boer ***@***.***>; Author ***@***.***> Subject: Re: [ePSIC-DLS/epsic_tools] Auto MIB and ptychographic submitter (PR #75) External email to Cardiff University - Take care when replying/opening attachments or links. Nid ebost mewnol o Brifysgol Caerdydd yw hwn - Cymerwch ofal wrth ateb/agor atodiadau neu ddolenni. @fallars requested changes on this pull request. Hi Josh, before I can accept this change could you refactor the code: change the format from a notebook into a python script and then have a separate notebook import the python script. This will make easier to read the code. where you have used functions from elsewhere perform imports instead. this should greatly reduce the length of the code. remove ASCII art from the script This might require further changes but I cannot tell until the above has occurred. fred — Reply to this email directly, view it on GitHub<#75 (review)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/BD3HQNVFS2HR5EQOVU6MAMD4MW6Q3AVCNFSM6AAAAACUHTCTXOVHI2DSMVQWIX3LMV43YUDVNRWFEZLROVSXG5CSMV3GSZLXHMZTQMRWGA4TGMBYHE>. You are receiving this because you authored the thread.Message ID: ***@***.***>