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45 changes: 45 additions & 0 deletions docs/source/user_guide/benchmarks/conformers.rst
Original file line number Diff line number Diff line change
Expand Up @@ -40,3 +40,48 @@ Reference data:
* Same as input data
* :math:`PNO-LCCSD(T)-F12/ AVQZ` level of theory: a local, explicitly
correlated coupled cluster method.


TorsionNet500
=============

Summary
-------

Performance in predicting torsion energy barriers for 500 drug-like organic
molecules, each scanned across a systematically sampled dihedral angle.

Metrics
-------

1. Barrier height error

For each fragment, a single point energy is computed for every conformer along
the dihedral scan. The predicted profile is aligned to the reference at its
minimum, and the barrier height is taken as the difference between the maximum
and minimum energy of the profile. The reported metric is the mean absolute
error of the barrier height across all fragments. The overall score is the
mlipaudit per-fragment soft-threshold score on the barrier height error.

A parity plot of the predicted against reference barrier heights is shown on
clicking the metric column.

Computational cost
------------------

Medium: 12,000 single point inference calls on small molecular systems.

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same as before, cpu/gpu estimate?


Data availability
-----------------

Input structures:

* TorsionNet: A Deep Neural Network to Rapidly Predict Small-Molecule
Torsional Energy Profiles with the Accuracy of Quantum Mechanics.
Rai, B. K. et al. J. Chem. Inf. Model. 2022, 62 (4), 785-800.
DOI: 10.1021/acs.jcim.1c01346

Reference data:

* Recomputed by InstaDeep at the :math:`\omega B97M-D3(BJ)/def2-TZVPPD`
level of theory (MLIP Audit benchmark suite).
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