⚡ Bolt: Replace df.iterrows() with df.to_dict('records')#85
Conversation
Converted Pandas DataFrame rows directly to a list of native Python dictionaries before list comprehension loops in `verify_processed_omol25.py` and `test_process_omol25.py`. This avoids the significant overhead caused by Pandas allocating and building `Series` objects for every row during `.iterrows()` calls. Tests pass and functionality remains perfectly equivalent since dicts share the exact same bracket notation syntax. Co-authored-by: alinelena <3306823+alinelena@users.noreply.github.com>
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💡 What
Replaced slow
df.iterrows()calls inverify_processed_omol25.pyandtest_process_omol25.pywithdf.to_dict('records')conversions prior to executing list comprehensions.🎯 Why
Iterating through a DataFrame via
df.iterrows()wraps every single row iteration in a PandasSeriesobject. This repeated object allocation overhead causes dramatic slow downs in processing loops, especially on larger datasets. Converting to a list of standard dictionaries is far more efficient and avoids this bottleneck entirely.📊 Impact
Significant reduction in processing time when loading data (specifically during DataFrame indexing), avoiding the expensive instantiation of numerous Pandas
Series. Functionality and data integrity are perfectly maintained.🔬 Measurement
Run
python -m pyteston non-MPI tests to verify existing validations pass correctly. Run theverify_processed_omol25.pyscript on a large Parquet/ExtXYZ dataset and time its execution to notice a measurable speedup.PR created automatically by Jules for task 9059888790682986603 started by @alinelena