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PlantCV Sorghum Shape and Morphology Analysis

The side view morphology analysis tutorial provides examples of analysis used for side-view images of plants, including shape, leaf angle, and stem/branch analysis Check out our interactive tutorial below!

Binder Colab

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plant shoot, single plant, side-view, RGB, shape analysis, leaf angle analysis, stem and branch segmentation, leaf length, leaf curvature, leaf tangent angle,

Citations

Schuhl H, Brown KE, Sheng H, Bhatt PK, Gutierrez J, Schneider D, Casto AL, Acosta-Gamboa L, Ballenger JG, Barbero F, Braley J, Brown AM, Chavez L, Cunningham S, Dilhara M, Dimech AM, Duenwald JG, Fischer A, Gordon JM, Hendrikse C, Hernandez GL, Hodge JG, Huber M, Hurr BM, Jarolmasjed S, Medina Jimenez K, Kenney S, Konkel G, Kutschera A, Lama S, Lohbihler M, Lorence A, Luebbert C, Ly N, Manching HK, Marrano A, Meerdink S, Miklave NM, Mudrageda P, Murphy KM, Peery JD, Pierik R, Polydore S, Robey C, Rogers T, Schultz TJ, Seigel E, Srivastava D, Summerer S, Sumner J, Teng C, Thompson AE, Tovar JC, van Daalen T, Watson M, Wheeler JJ, Wilson MC, Ying KR, Zare A, Zhou Y, Gehan MA, Fahlgren N. PlantCV v4: Image analysis software for high-throughput plant phenotyping. bioRxiv. 2025. p. 2025.11.19.689271. doi:10.1101/2025.11.19.689271.

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