{rpt} (R package template)

The goal of {rpt} is to provide a template for creating R packages following UCD-SERG standards. It includes example functions, documentation patterns, Quarto-based documentation infrastructure, and GitHub Actions workflows to help you get started quickly.

Installation

You can install the development version of {rpt} from GitHub with:

# install.packages("pak")
pak::pak("UCD-SERG/rpt")

Example

The package ships with two exported functions as starting points.

example_function() computes the median of a numeric vector, removing NA values automatically:

library(rpt)
example_function(c(1, 2, 3, 4, 5))
#> [1] 3
example_function(c(1, NA, 3, 4, 5))
#> [1] 3.5

calculate_summary() returns the mean, median, and standard deviation as a named list:

calculate_summary(c(1, 2, 3, 4, 5))
#> $mean
#> [1] 3
#> 
#> $median
#> [1] 3
#> 
#> $sd
#> [1] 1.58

Template Features

Multi-Format Quarto Vignettes and Articles

Vignettes and articles in this template are written in Quarto (.qmd) and can be rendered to multiple output formats from a single source file:

• HTML — default format for the documentation website
• RevealJS slides — presentation version of every vignette/article
• DOCX — Word document version for sharing outside the web

Slide Break Shortcode

A slidebreak shortcode is included and works across all slide deck formats: RevealJS, PowerPoint (.pptx), and Beamer (LaTeX). Use it to insert a new slide in any format:

{{</* slidebreak */>}}

Mathematical Notation in roxygen2

Function documentation can include inline and display equations using standard roxygen2 macros that render correctly in both HTML and PDF help pages:

• \eqn{x_{0.5}} for inline math
• \deqn{m = x_{(n+1)/2}} for display equations

See ?example_function for a worked example.

Quarto Extensions

The following Quarto extensions are preinstalled to enhance documentation:

Extension	Purpose
d-morrison/div-anchors	Permalink anchors for theorem/proof divs
d-morrison/equation-anchors	Permalink anchors for numbered equations
sun123zxy/callouty-theorem	Render theorems, definitions, and proofs as callout blocks

LaTeX Macro Submodule

A macros git submodule (located at vignettes/macros/) provides shared LaTeX macro definitions. Include it in any vignette or article with:

{{</* include macros/macros.qmd */>}}

Quarto/pandoc expands the macros at compile time, so MathJax on the website receives only standard LaTeX.

Package Structure Visualization

The Package Function Structure article demonstrates how to use foodwebr to generate dependency graphs for your package functions.

Development

Building the Documentation Site

This package uses altdoc with Quarto to build its documentation site. To build and preview the documentation locally:

# Load the package
pkgload::load_all()

# Render the documentation
altdoc::render_docs()

# Preview the site
altdoc::preview_docs()

The documentation is automatically built and deployed to GitHub Pages via GitHub Actions when changes are pushed to the main branch.

Other R Package Template Options

If you’re looking for alternative R package templates, you may also want to consider:

• r.pkg.template - A comprehensive R package template from Insights Engineering

Code of Conduct

Please note that the {rpt} project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.