cBioPortal · dippindots · Sep 29, 2025 · Oct 8, 2025 · Oct 10, 2025 · Oct 10, 2025
diff --git a/.circleci/config.yml b/.circleci/config.yml
@@ -288,7 +288,9 @@ jobs:
       BACKEND_PORT: 8080
       FRONTEND_PORT: 3000
       DOCKER_IMAGE_MYSQL: cbioportal/mysql:8.0-database-test
-      DOCKER_IMAGE_CBIOPORTAL: cbioportal/cbioportal:master
+      DOCKER_IMAGE_CBIOPORTAL: cbioportal/cbioportal:rc-7.0-clickhouse-only
+      DOCKER_COMPOSE_REF: rc-7.0-clickhouse-only
+      APP_CBIOPORTAL_CORE_BRANCH: main
     steps:
       - attach_workspace:
           at: /tmp/repo
@@ -307,7 +309,7 @@ jobs:
             APPLICATION_PROPERTIES_PATH: '/tmp/repo/cbioportal-frontend/end-to-end-test/local/runtime-config/portal.properties'
           command: |
             cd cbioportal-test
-            nohup ./scripts/docker-compose.sh --portal_type='keycloak' >> /tmp/repo/docker-compose-logs.txt 2>&1 &
+            nohup ./scripts/docker-compose.sh --portal_type='keycloak' --compose_extensions='-f addon/clickhouse/docker-compose.clickhouse.yml'  >> /tmp/repo/docker-compose-logs.txt 2>&1 &
       - run:
           name: Check keycloak connection at localhost
           command: |

diff --git a/end-to-end-test/local/runtime-config/portal.properties b/end-to-end-test/local/runtime-config/portal.properties
@@ -2,11 +2,24 @@
 app.name=cbioportal
 
 # database
+spring.datasource.mysql.url=jdbc:ch://cbioportal-clickhouse-database:8123/cbioportal?zeroDateTimeBehavior=convertToNull
+spring.datasource.mysql.username=cbio_user
+spring.datasource.mysql.password=somepassword
+spring.datasource.mysql.driver-class-name=com.clickhouse.jdbc.ClickHouseDriver
+spring.datasource.clickhouse.url=jdbc:ch://cbioportal-clickhouse-database:8123/cbioportal
+spring.datasource.clickhouse.username=cbio_user
+spring.datasource.clickhouse.password=somepassword
+spring.datasource.clickhouse.driver-class-name=com.clickhouse.jdbc.ClickHouseDriver
 spring.datasource.url=jdbc:mysql://cbioportal-database:3306/cbioportal?useSSL=false&allowPublicKeyRetrieval=true
 spring.datasource.username=cbio_user
 spring.datasource.password=somepassword
-spring.jpa.database-platform=org.hibernate.dialect.MySQL5InnoDBDialect
 spring.datasource.driver-class-name=com.mysql.jdbc.Driver
+spring.jpa.database-platform=org.hibernate.dialect.MySQL5InnoDBDialect
+
+# clickhouse mode
+clickhouse_mode=true
+spring.profiles.active=clickhouse
+
 # set tomcat_resource_name when using dbconnector=jndi instead of the default
 # dbconnector=dbcp. Note that dbconnector needs to be set in CATLINA_OPTS when
 # using Tomcat (CATALINA_OPTS="-Ddbconnector=jndi"). It does not get picked up

diff --git a/...ce/coexpression_tab_coadread_tcga_pub_initial_load_element_chrome_1600x1000.png b/...ce/coexpression_tab_coadread_tcga_pub_initial_load_element_chrome_1600x1000.png
diff --git a/..._coadread_tcga_pub_loc_scale_x_and_y_mutations_off_element_chrome_1600x1000.png b/..._coadread_tcga_pub_loc_scale_x_and_y_mutations_off_element_chrome_1600x1000.png
diff --git a/...b_coadread_tcga_pub_log_scale_x_and_y_mutations_on_element_chrome_1600x1000.png b/...b_coadread_tcga_pub_log_scale_x_and_y_mutations_on_element_chrome_1600x1000.png
diff --git a/...ad_tcga_pub_log_scale_x_and_y_with_regression_line_element_chrome_1600x1000.png b/...ad_tcga_pub_log_scale_x_and_y_with_regression_line_element_chrome_1600x1000.png
diff --git a/...oadread_tcga_pub_switch_profiles_+_regression_line_element_chrome_1600x1000.png b/...oadread_tcga_pub_switch_profiles_+_regression_line_element_chrome_1600x1000.png
diff --git a/...coexpression_tab_coadread_tcga_pub_switch_profiles_element_chrome_1600x1000.png b/...coexpression_tab_coadread_tcga_pub_switch_profiles_element_chrome_1600x1000.png
diff --git a/...nce/coexpression_tab_coadread_tcga_pub_switch_tabs_element_chrome_1600x1000.png b/...nce/coexpression_tab_coadread_tcga_pub_switch_tabs_element_chrome_1600x1000.png
diff --git a/..._tab_coadread_tcga_pub_with_user_defined_case_list_element_chrome_1600x1000.png b/..._tab_coadread_tcga_pub_with_user_defined_case_list_element_chrome_1600x1000.png
diff --git a/...d_2016_with_cdkn2a_mdm2_and_merged_track_mdm4_tp53_element_chrome_1600x1000.png b/...d_2016_with_cdkn2a_mdm2_and_merged_track_mdm4_tp53_element_chrome_1600x1000.png
diff --git a/..._tab_-_nsclc_tcga_broad_2016_with_overlapping_tp53_element_chrome_1600x1000.png b/..._tab_-_nsclc_tcga_broad_2016_with_overlapping_tp53_element_chrome_1600x1000.png
diff --git a/...nce/download_tab_-_nsclc_tcga_broad_2016_with_tp53_element_chrome_1600x1000.png b/...nce/download_tab_-_nsclc_tcga_broad_2016_with_tp53_element_chrome_1600x1000.png
diff --git a/...nce/enrichments_tab_coadread_tcga_pub_mrna_profile_element_chrome_1600x1000.png b/...nce/enrichments_tab_coadread_tcga_pub_mrna_profile_element_chrome_1600x1000.png
diff --git a/...nce/excluding_unprofiled_samples_data_download_tab_element_chrome_1600x1000.png b/...nce/excluding_unprofiled_samples_data_download_tab_element_chrome_1600x1000.png
diff --git a/...reference/excluding_unprofiled_samples_igv_tab_tab_element_chrome_1600x1000.png b/...reference/excluding_unprofiled_samples_igv_tab_tab_element_chrome_1600x1000.png
diff --git a/...eference/excluding_unprofiled_samples_mutation_tab_element_chrome_1600x1000.png b/...eference/excluding_unprofiled_samples_mutation_tab_element_chrome_1600x1000.png
diff --git a/...hots/reference/fusion_filter_filter_study_from_url_element_chrome_1600x1000.png b/...hots/reference/fusion_filter_filter_study_from_url_element_chrome_1600x1000.png
diff --git a/...on_page_methylation_enrichments_tab_several_groups_element_chrome_1600x1000.png b/...on_page_methylation_enrichments_tab_several_groups_element_chrome_1600x1000.png
diff --git a/...arison_page_methylation_enrichments_tab_two_groups_element_chrome_1600x1000.png b/...arison_page_methylation_enrichments_tab_two_groups_element_chrome_1600x1000.png
diff --git a/...n_page_mutations_tab_three_groups_first_unselected_element_chrome_1600x1000.png b/...n_page_mutations_tab_three_groups_first_unselected_element_chrome_1600x1000.png
diff --git a/...nce/group_comparison_page_mutations_tab_two_groups_element_chrome_1600x1000.png b/...nce/group_comparison_page_mutations_tab_two_groups_element_chrome_1600x1000.png
diff --git a/...tations_tab_two_groups_no_mutations_types_selected_element_chrome_1600x1000.png b/...tations_tab_two_groups_no_mutations_types_selected_element_chrome_1600x1000.png
diff --git a/...ence/loads_multiple_studies_with_treatments_tables_element_chrome_1600x1000.png b/...ence/loads_multiple_studies_with_treatments_tables_element_chrome_1600x1000.png
diff --git a/.../screenshots/reference/no_session_coexpression_tab_element_chrome_1600x1000.png b/.../screenshots/reference/no_session_coexpression_tab_element_chrome_1600x1000.png
diff --git a/...ference/no_session_comparison_tab_mrna_enrichments_element_chrome_1600x1000.png b/...ference/no_session_comparison_tab_mrna_enrichments_element_chrome_1600x1000.png
diff --git a/...screenshots/reference/no_session_data_download_tab_element_chrome_1600x1000.png b/...screenshots/reference/no_session_data_download_tab_element_chrome_1600x1000.png
diff --git a/...emote/screenshots/reference/no_session_igv_tab_tab_element_chrome_1600x1000.png b/...emote/screenshots/reference/no_session_igv_tab_tab_element_chrome_1600x1000.png
diff --git a/...mote/screenshots/reference/no_session_mutation_tab_element_chrome_1600x1000.png b/...mote/screenshots/reference/no_session_mutation_tab_element_chrome_1600x1000.png
diff --git a/.../remote/screenshots/reference/no_session_plots_tab_element_chrome_1600x1000.png b/.../remote/screenshots/reference/no_session_plots_tab_element_chrome_1600x1000.png
diff --git a/...int_should_sort_patients_correctly_in_gbm_tcga_pub_element_chrome_1600x1000.png b/...int_should_sort_patients_correctly_in_gbm_tcga_pub_element_chrome_1600x1000.png
diff --git a/...rint_should_sort_samples_correctly_in_gbm_tcga_pub_element_chrome_1600x1000.png b/...rint_should_sort_samples_correctly_in_gbm_tcga_pub_element_chrome_1600x1000.png
diff --git a/...ference/patient_page_valid_after_cohort_navigation_element_chrome_1600x1000.png b/...ference/patient_page_valid_after_cohort_navigation_element_chrome_1600x1000.png
diff --git a/...reenshots/reference/patient_view_lgg_ucsf_2014_p04_element_chrome_1600x1000.png b/...reenshots/reference/patient_view_lgg_ucsf_2014_p04_element_chrome_1600x1000.png
diff --git a/...atient_view_pathways_tab_msk_impact_2017_p-0000377_element_chrome_1600x1000.png b/...atient_view_pathways_tab_msk_impact_2017_p-0000377_element_chrome_1600x1000.png
diff --git a/.../reference/plots_tab_box_plot_color_by_cancer_type_element_chrome_1600x1000.png b/.../reference/plots_tab_box_plot_color_by_cancer_type_element_chrome_1600x1000.png
diff --git a/...box_plot_color_by_cancer_type_highlight_categories_element_chrome_1600x1000.png b/...box_plot_color_by_cancer_type_highlight_categories_element_chrome_1600x1000.png
diff --git a/...e/screenshots/reference/plots_tab_copy_number_view_element_chrome_1600x1000.png b/...e/screenshots/reference/plots_tab_copy_number_view_element_chrome_1600x1000.png
diff --git a/...e/plots_tab_molecular_vs_molecular_different_genes_element_chrome_1600x1000.png b/...e/plots_tab_molecular_vs_molecular_different_genes_element_chrome_1600x1000.png
diff --git a/...erence/plots_tab_scatter_plot_color_by_cancer_type_element_chrome_1600x1000.png b/...erence/plots_tab_scatter_plot_color_by_cancer_type_element_chrome_1600x1000.png
diff --git a/...ter_plot_color_by_cancer_type_highlight_categories_element_chrome_1600x1000.png b/...ter_plot_color_by_cancer_type_highlight_categories_element_chrome_1600x1000.png
diff --git a/...nce/plots_tab_scatter_plot_color_by_mutation_count_element_chrome_1600x1000.png b/...nce/plots_tab_scatter_plot_color_by_mutation_count_element_chrome_1600x1000.png
diff --git a/...tab_scatter_plot_color_by_mutation_count_log_scale_element_chrome_1600x1000.png b/...tab_scatter_plot_color_by_mutation_count_log_scale_element_chrome_1600x1000.png
diff --git a/...ence/plots_tab_waterfall_plot_color_by_cancer_type_element_chrome_1600x1000.png b/...ence/plots_tab_waterfall_plot_color_by_cancer_type_element_chrome_1600x1000.png
diff --git a/...all_plot_color_by_cancer_type_highlight_categories_element_chrome_1600x1000.png b/...all_plot_color_by_cancer_type_highlight_categories_element_chrome_1600x1000.png
diff --git a/...e/plots_tab_waterfall_plot_color_by_mutation_count_element_chrome_1600x1000.png b/...e/plots_tab_waterfall_plot_color_by_mutation_count_element_chrome_1600x1000.png
diff --git a/...b_waterfall_plot_color_by_mutation_count_log_scale_element_chrome_1600x1000.png b/...b_waterfall_plot_color_by_mutation_count_log_scale_element_chrome_1600x1000.png
diff --git a/...ge_heatmap_with_two_mutations_selected_from_before_element_chrome_1600x1000.png b/...ge_heatmap_with_two_mutations_selected_from_before_element_chrome_1600x1000.png
diff --git a/...shots/reference/pvge_hover_a_mutation_with_heatmap_element_chrome_1600x1000.png b/...shots/reference/pvge_hover_a_mutation_with_heatmap_element_chrome_1600x1000.png
diff --git a/...nshots/reference/pvge_initial_view_with_line_chart_element_chrome_1600x1000.png b/...nshots/reference/pvge_initial_view_with_line_chart_element_chrome_1600x1000.png
diff --git a/.../reference/pvge_one_mutation_selected_with_heatmap_element_chrome_1600x1000.png b/.../reference/pvge_one_mutation_selected_with_heatmap_element_chrome_1600x1000.png
diff --git a/...ference/pvge_one_mutation_selected_with_line_chart_element_chrome_1600x1000.png b/...ference/pvge_one_mutation_selected_with_line_chart_element_chrome_1600x1000.png
diff --git a/...st/remote/screenshots/reference/pvge_show_timeline_element_chrome_1600x1000.png b/...st/remote/screenshots/reference/pvge_show_timeline_element_chrome_1600x1000.png
diff --git a/...reenshots/reference/pvge_switch_to_sequential_mode_element_chrome_1600x1000.png b/...reenshots/reference/pvge_switch_to_sequential_mode_element_chrome_1600x1000.png
diff --git a/...emote/screenshots/reference/pvge_uncluster_heatmap_element_chrome_1600x1000.png b/...emote/screenshots/reference/pvge_uncluster_heatmap_element_chrome_1600x1000.png
diff --git a/...reference/removes_top_treatment_track_successfully_element_chrome_1600x1000.png b/...reference/removes_top_treatment_track_successfully_element_chrome_1600x1000.png
diff --git a/...son_tab_methylation_enrichments_tab_several_groups_element_chrome_1600x1000.png b/...son_tab_methylation_enrichments_tab_several_groups_element_chrome_1600x1000.png
diff --git a/...comparison_tab_mrna_enrichments_tab_several_groups_element_chrome_1600x1000.png b/...comparison_tab_mrna_enrichments_tab_several_groups_element_chrome_1600x1000.png
diff --git a/...iew_comparison_tab_mrna_enrichments_tab_two_groups_element_chrome_1600x1000.png b/...iew_comparison_tab_mrna_enrichments_tab_two_groups_element_chrome_1600x1000.png
diff --git a/...parison_tab_protein_enrichments_tab_several_groups_element_chrome_1600x1000.png b/...parison_tab_protein_enrichments_tab_several_groups_element_chrome_1600x1000.png
diff --git a/..._comparison_tab_protein_enrichments_tab_two_groups_element_chrome_1600x1000.png b/..._comparison_tab_protein_enrichments_tab_two_groups_element_chrome_1600x1000.png
diff --git a/...ote/screenshots/reference/session_coexpression_tab_element_chrome_1600x1000.png b/...ote/screenshots/reference/session_coexpression_tab_element_chrome_1600x1000.png
diff --git a/.../reference/session_comparison_tab_mrna_enrichments_element_chrome_1600x1000.png b/.../reference/session_comparison_tab_mrna_enrichments_element_chrome_1600x1000.png
diff --git a/...te/screenshots/reference/session_data_download_tab_element_chrome_1600x1000.png b/...te/screenshots/reference/session_data_download_tab_element_chrome_1600x1000.png
diff --git a/...t/remote/screenshots/reference/session_igv_tab_tab_element_chrome_1600x1000.png b/...t/remote/screenshots/reference/session_igv_tab_tab_element_chrome_1600x1000.png
diff --git a/.../remote/screenshots/reference/session_mutation_tab_element_chrome_1600x1000.png b/.../remote/screenshots/reference/session_mutation_tab_element_chrome_1600x1000.png
diff --git a/...est/remote/screenshots/reference/session_plots_tab_element_chrome_1600x1000.png b/...est/remote/screenshots/reference/session_plots_tab_element_chrome_1600x1000.png
diff --git a/end-to-end-test/remote/specs/core/quickSearch.spec.js b/end-to-end-test/remote/specs/core/quickSearch.spec.js
@@ -34,35 +34,30 @@ describe('Quick Search', () => {
     });
 
     it('should give results for studies', async () => {
-        await clickElement(
-            'strong=Adrenocortical Carcinoma (TCGA, Firehose Legacy)'
-        );
-        await (
-            await getElement(
-                'h3=Adrenocortical Carcinoma (TCGA, Firehose Legacy)'
-            )
-        ).waitForExist();
+        //await browser.debug();
+
+        const SELECTOR =
+            'Adenoid Cystic Carcinoma (FMI, Am J Surg Pathl. 2014)';
+
+        await clickElement(`strong=${SELECTOR}`);
+        await (await getElement(`h3=${SELECTOR}`)).waitForExist();
 
         assert.equal(
-            await (
-                await getElement(
-                    'h3=Adrenocortical Carcinoma (TCGA, Firehose Legacy)'
-                )
-            ).isDisplayed(),
+            await (await getElement(`h3=${SELECTOR}`)).isDisplayed(),
             true,
-            'modal is visible'
+            'title is visible'
         );
     });
 
     it('should give results for genes', async () => {
-        //browser.debug();
-        await clickElement('strong=458 more genes (click to load 20 more)');
-        await (await getElement('strong=ADAM12')).waitForExist();
-        await clickElement('strong=ADAM15');
-        await (await getElement('a=ADAM15')).waitForExist({ timeout: 60000 });
+        await (await getElement('strong=ADAD1')).waitForExist();
+
+        await clickElement('strong=ADAD1');
+
+        await (await getElement('a=ADAD1')).waitForExist({ timeout: 60000 });
 
         assert.equal(
-            await (await getElement('a=ADAM15')).isDisplayed(),
+            await (await getElement('a=ADAD1')).isDisplayed(),
             true,
             'we navigated successfully to gene query'
         );

diff --git a/env/master.sh b/env/master.sh
@@ -1,2 +1,2 @@
-export CBIOPORTAL_URL="${CBIOPORTAL_URL:-https://www.cbioportal.org}"
+export CBIOPORTAL_URL="https://staging.cbioportal.org"
 export GENOME_NEXUS_URL="${GENOME_NEXUS_URL:-https://www.genomenexus.org}"
diff --git a/env/rc-7.0-clickhouse-only.sh b/env/rc-7.0-clickhouse-only.sh
@@ -0,0 +1,2 @@
+export CBIOPORTAL_URL="https://staging.cbioportal.org"
+export GENOME_NEXUS_URL="${GENOME_NEXUS_URL:-https://www.genomenexus.org}"
diff --git a/scripts/e2e.sh b/scripts/e2e.sh
@@ -3,10 +3,13 @@ set -e
 set -o allexport
 
 TEST_REPO_URL="https://github.com/cBioPortal/cbioportal-test.git"
+TEST_REPO_REF="main"
 DOCKER_COMPOSE_REPO_URL="https://github.com/cBioPortal/cbioportal-docker-compose.git"
+DOCKER_COMPOSE_REF="rc-7.0-clickhouse-only"
 STUDIES='ascn_test_study study_hg38 teststudy_genepanels study_es_0 lgg_ucsf_2014_test_generic_assay'
 APPLICATION_PROPERTIES_PATH=$(cd -- "$(dirname -- "$0")" && cd .. && pwd)/end-to-end-test/local/runtime-config/portal.properties
 KEYCLOAK="true"
+CLICKHOUSE="true"
 RUN_FRONTEND="false" # Set to "true" if you want to build and run frontend at localhost:3000
 RUN_TESTS="false" # Set to "true" if you want to run all e2e:local tests
 
@@ -17,14 +20,21 @@ export DOCKER_IMAGE_MYSQL=cbioportal/mysql:8.0-database-test
 export APPLICATION_PROPERTIES_PATH=$APPLICATION_PROPERTIES_PATH
 
 # Backend image
-export DOCKER_IMAGE_CBIOPORTAL=cbioportal/cbioportal:master
+export DOCKER_IMAGE_CBIOPORTAL=cbioportal/cbioportal:rc-7.0-clickhouse-only
+
+# cbioportal-core branch
+export APP_CBIOPORTAL_CORE_BRANCH=main
+
+# Use pre-release clickhouse for docker compose
+export DOCKER_COMPOSE_REF=$DOCKER_COMPOSE_REF
 
 # Create a temp dir and clone test repo
 ROOT_DIR=$(pwd)
 TEMP_DIR=$(mktemp -d)
 git clone "$TEST_REPO_URL" "$TEMP_DIR/cbioportal-test" || exit 1
 git clone "$DOCKER_COMPOSE_REPO_URL" "$TEMP_DIR/cbioportal-docker-compose" || exit 1
 cd "$TEMP_DIR/cbioportal-test" || exit 1
+git checkout "$TEST_REPO_REF" || exit 1
 
 # Generate keycloak config
 if [ "$KEYCLOAK" = "true" ]; then
@@ -34,7 +44,13 @@ fi
 
 # Start backend
 if [ "$KEYCLOAK" = "true" ]; then
-  ./scripts/docker-compose.sh --portal_type='keycloak' --docker_args='-d'
+  if [ "$CLICKHOUSE" = "true" ]; then
+    COMPOSE_EXTENSIONS='-f addon/clickhouse/docker-compose.clickhouse.yml'
+  else
+    COMPOSE_EXTENSIONS=''
+  fi
+
+  ./scripts/docker-compose.sh --portal_type='keycloak' --compose_extensions="$COMPOSE_EXTENSIONS" --docker_args='-d'
 
   # Check keycloak connection at localhost:8081
   ./utils/check-connection.sh --url=localhost:8081 --max_retries=50

diff --git a/src/pages/resultsView/ResultsViewPageStore.ts b/src/pages/resultsView/ResultsViewPageStore.ts
@@ -3068,7 +3068,7 @@ export class ResultsViewPageStore extends AnalysisStore
         {
             invoke: async () =>
                 await getClient().getAllStudiesUsingGET({
-                    projection: REQUEST_ARG_ENUM.PROJECTION_SUMMARY,
+                    projection: REQUEST_ARG_ENUM.PROJECTION_DETAILED,
                 }),
         },
         []
@@ -3238,7 +3238,6 @@ export class ResultsViewPageStore extends AnalysisStore
                     );
                 }
             );
-
             return Promise.all(promises).then((cnaData: any[]) =>
                 _.flattenDeep(cnaData)
             );
@@ -4259,10 +4258,14 @@ export class ResultsViewPageStore extends AnalysisStore
         {
             await: () => [this.studyIds],
             invoke: async () => {
-                return getClient().fetchStudiesUsingPOST({
-                    studyIds: this.studyIds.result!,
+                // we do this because get all studies (detailed projection) will be in cache
+                // for all users since it is the same for everyone
+                const allStudies = await getClient().getAllStudiesUsingGET({
                     projection: REQUEST_ARG_ENUM.PROJECTION_DETAILED,
                 });
+                return allStudies.filter(study =>
+                    this.studyIds.result!.includes(study.studyId)
+                );
             },
         },
         []

diff --git a/src/pages/resultsView/coExpression/CoExpressionViz.tsx b/src/pages/resultsView/coExpression/CoExpressionViz.tsx
@@ -150,7 +150,12 @@ export default class CoExpressionViz extends React.Component<
         await: () => [this.coExpressionDataPromise],
         invoke: () => {
             const coexpressions = this.coExpressionDataPromise.result!;
-            const sortedByPvalue = _.sortBy(coexpressions, c => c.pValue);
+
+            const sortedByPvalue = _.sortBy(coexpressions, [
+                c => c.pValue,
+                c => c.geneticEntityName,
+            ]);
+
             const qValues = calculateQValues(sortedByPvalue.map(c => c.pValue));
             qValues.forEach((qValue, index) => {
                 (sortedByPvalue[index] as CoExpressionWithQ).qValue = qValue;

diff --git a/src/pages/studyView/StudyViewPageStore.ts b/src/pages/studyView/StudyViewPageStore.ts
@@ -6179,13 +6179,14 @@ export class StudyViewPageStore
         },
     });
 
-    readonly namespaceAttributes = remoteData({
+    readonly namespaceAttributes = remoteData<NamespaceAttribute[]>({
         await: () => [this.queriedPhysicalStudyIds],
         invoke: async () => {
             if (this.queriedPhysicalStudyIds.result.length > 0) {
-                return await getClient().fetchNamespaceAttributesUsingPOST({
-                    studyIds: this.queriedPhysicalStudyIds.result,
-                });
+                return [];
+                // return await getClient().fetchNamespaceAttributesUsingPOST({
+                //     studyIds: this.queriedPhysicalStudyIds.result,
+                // });
             }
             return [];
         },

diff --git a/src/shared/api/cbioportalClientInstance.ts b/src/shared/api/cbioportalClientInstance.ts
@@ -19,6 +19,6 @@ proxyColumnStore(clientColumnStore, 'getSamplesByKeyword');
 proxyColumnStore(clientColumnStore, 'getSampleInStudy');
 proxyColumnStore(clientColumnStore, 'getAllSamplesInStudy');
 proxyColumnStore(clientColumnStore, 'getAllSamplesOfPatientInStudy');
-//proxyColumnStore(clientColumnStore, 'getAllStudies');
+proxyColumnStore(clientColumnStore, 'getAllStudies');
 
 export default client;
diff --git a/src/shared/api/cbioportalInternalClientInstance.ts b/src/shared/api/cbioportalInternalClientInstance.ts
@@ -32,7 +32,7 @@ proxyColumnStore(internalClientColumnStore, 'fetchGenomicDataBinCounts');
 proxyColumnStore(internalClientColumnStore, 'fetchGenericAssayDataBinCounts');
 proxyColumnStore(internalClientColumnStore, 'fetchGenericAssayDataCounts');
 proxyColumnStore(internalClientColumnStore, 'fetchClinicalDataViolinPlots');
-//proxyColumnStore(internalClientColumnStore, 'fetchAlterationEnrichments');
+proxyColumnStore(internalClientColumnStore, 'fetchAlterationEnrichments');
 
 export default internalClient;
 

diff --git a/src/shared/components/oncoprint/OncoprintUtils.ts b/src/shared/components/oncoprint/OncoprintUtils.ts
@@ -739,6 +739,7 @@ export function makeGeneticTrackWith({
             ? oql.list.map(({ gene }) => gene)
             : [oql.gene];
         const dataByCase = caseData.cases;
+
         const data = sampleMode
             ? makeGeneticTrackData(
                   dataByCase.samples,

diff --git a/src/shared/lib/GenericAssayUtils/GenericAssayCommonUtils.ts b/src/shared/lib/GenericAssayUtils/GenericAssayCommonUtils.ts
@@ -96,17 +96,21 @@ export async function fetchGenericAssayMetaByMolecularProfileIdsGroupByMolecular
         [molecularProfileId: string]: GenericAssayMeta[];
     } = {};
 
-    await Promise.all(
-        genericAssayProfiles.map(profile =>
-            fetchGenericAssayMetaByProfileIds([
-                profile.molecularProfileId,
-            ]).then(genericAssayMeta => {
-                genericAssayMetaGroupByMolecularProfileId[
-                    profile.molecularProfileId
-                ] = genericAssayMeta;
-            })
-        )
+    const allProfileIds = genericAssayProfiles.map(
+        profile => profile.molecularProfileId
     );
+    const allGenericAssayMeta = await fetchGenericAssayMetaByProfileIds(
+        allProfileIds
+    );
+
+    // Populate each profile with the full metadata list
+    // Note: The API returns all metadata for all profiles combined,
+    // so each profile gets the same complete list
+    allProfileIds.forEach(profileId => {
+        genericAssayMetaGroupByMolecularProfileId[
+            profileId
+        ] = allGenericAssayMeta;
+    });
     return genericAssayMetaGroupByMolecularProfileId;
 }
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		export CBIOPORTAL_URL="https://staging.cbioportal.org"
		export GENOME_NEXUS_URL="${GENOME_NEXUS_URL:-https://www.genomenexus.org}"