Name		Name	Last commit message	Last commit date
docs		docs
resources		resources
skoots		skoots
.gitignore		.gitignore
.readthedocs.yaml		.readthedocs.yaml
LICENSE		LICENSE
README.md		README.md
note.jpg		note.jpg
requirements.txt		requirements.txt
setup.cfg		setup.cfg
setup.py		setup.py
slice_test.py		slice_test.py
warning2.jpg		warning2.jpg

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SKOOTS

SKeletOn ObjecT Segmentation - 2D/3D instance segmentation of arbitrary biomedical images.

To install, make sure pyTorch 2.1 is installed with CUDA support.

pip install skoots

Documentation: skoots.readthedocs.io

BioRxiv: https://www.biorxiv.org/content/10.1101/2023.05.05.539611v1

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SKeleton Oriented ObjecT Segmentation (SKOOTS) - instance segmentation of large, densely packed objects in biomedical images

skoots.readthedocs.io

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