1.43.0

Added

• DotPlotGenes class for pre-computing gene-level dot plot metrics (#399, #401)

1.42.0

Added

• Remove all BigQuery integration (#397)

Changed

• Bump requests from 2.32.0 to 2.32.4 (#396)

Fixed

1.41.3

Fixed

• Make raw_location parameter for differential expression optional (#394)

1.41.2

Changed

• Use minified ontologies for metadata validation (#392)
• Updated to Alexandria convention 3.0.0 (#392)

1.41.1

Fixed

• Handle invalid obsm key errors and return actionable error message (#390)
• Restore missing DE CLI parameter (#390)

1.41.0

Added

• Add raw_location input for DE processing (#387)

Changed

• Fail AnnData ingest if expected raw data is missing (#388)

Fixed

• Update ontology label for metadata validation tests (#385)

1.40.1

Changed

• Add logging to STDOUT for Cloud Logging integration (#383)

1.40.0

Added

• Incorporate row indices from author DE input file into parsed DE output files (#381)

Changed

• Maintain author-supplied row ordering for DE output when appropriate else sort by significance metric (#381)

Fixed

• Added missing attribute descriptions in metadata convention (no effect on validation) (#381)

1.39.0

Added

• Extending MongoDB auto-reconnect to all inserts (#379)

Changed

• Update docker-compose-setup.sh to use Google Artifact Registry (#378)

Fixed

• Addressed branch ref issues on Minify ontologies action (#377)

1.38.0

Added

• Enable pairwise DE in ingest pipeline (#374 )