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Summary

  • enable the yearbook widget to fetch segmentation paths and transcript tiles for each cell viewport and overlay them alongside imagery
  • add control toggles for segmentation and transcripts, color handling, and tile-union fetching to keep multi-view grids responsive
  • expose a max_tiles_to_view knob for the yearbook widget and style the new control row

Testing

  • not run (not requested)

Codex Task

@cornhundred cornhundred changed the title Add segmentation and transcript overlays to yearbook widget yearbook new widget Nov 25, 2025
@cornhundred
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Summary

  • Added a Yearbook frontend that builds a grid of orthographic views with synchronized zoom, per-portrait backgrounds/image layers, gene-search controls, and bar graphs while updating tooltips, overlays, and displayed cell tracking for each viewport.
  • Refined transcript layer handling to remap scatter data, honor filtered selections, and preserve gene-aware coloring and opacity during interaction callbacks.
  • Styled the Yearbook control panel and bar containers to mirror the Landscape layout with mode buttons, sliders, and bar rows.
  • Extended the Yearbook Python widget to expose traitlets for grid sizing, windowed view control, metadata uploads, and optional AnnData-derived cell attributes.

@cornhundred cornhundred marked this pull request as draft November 25, 2025 21:49
@cornhundred cornhundred changed the title yearbook new widget yearbook widget Nov 25, 2025
Base automatically changed from codex/refactor-manual-categories-to-use-obs_store to main November 25, 2025 21:59
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2 participants