Pipeline configurations for Cirro
| File name | Description | Documentation |
|---|---|---|
| process-definition.json | Database entry for registering the process | schemas/process-definition.schema.json |
| process-form.json | Renders the run analysis form | Customizing the Form |
| process-input.json | Maps the workflow parameters to the parameters from Cirro | Form-To-Workflow Mapping |
| process-output.json | Post process tasks, these are typically steps needed to create the web-optimized assets used in visualizations | Output Files |
| process-compute.config | Nextflow/Cromwell compute environment overrides | Workflow Configuration override |
| preprocess.py | Python script to preprocess the input data before running the workflow | Preprocess |