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Met-loss+Acetyl parsing

bugSomething isn't workingSomething isn't working

Status: Open.

#588 In bigbio/quantms;

· Kevin-Brockers opened on Oct 6, 2025

[FEATURE] Print useful help messages for typos in CLI arguments

enhancementNew feature or requestNew feature or request

Status: Open.

#587 In bigbio/quantms;

· fabianegli opened on Sep 26, 2025

The sdrf file check for 'sdrf' in the filename seems arbitrary

Status: Open.

#585 In bigbio/quantms;

· fabianegli opened on Sep 25, 2025

[FEATURE] Better error message when running quantms with no input

enhancementNew feature or requestNew feature or request

Status: Open.

#584 In bigbio/quantms;

· fabianegli opened on Sep 25, 2025

Pipeline fails due to file errors - missing files

Status: Open.

#582 In bigbio/quantms;

· barkdaron opened on Sep 11, 2025

Error in the msstats_tmt.R function parse_contrasts

bugSomething isn't workingSomething isn't working

Status: Open.

#577 In bigbio/quantms;

· kai-lawsonmcdowall opened on Aug 20, 2025

quantms.io protein groups representation.

enhancementNew feature or requestNew feature or request

high-priority

Status: Open.

Feature

#559 In bigbio/quantms;

· ypriverol opened on Jun 4, 2025

Discussion about ConsesusID vs UniScore

enhancementNew feature or requestNew feature or request

low-priority

research-projects

Status: Open.

#558 In bigbio/quantms;

· ypriverol opened on Jun 3, 2025

IDMapper failing on few files

enhancementNew feature or requestNew feature or request

Status: Open.

#557 In bigbio/quantms;

· MetteBoge opened on Jun 2, 2025

Multiple search engine fails to produce proteins 1% FDR

bugSomething isn't workingSomething isn't working

Status: Open.

#553 In bigbio/quantms;

· ypriverol opened on May 24, 2025

msgf+ needs the disassociation method/fragmentation methods

enhancementNew feature or requestNew feature or request

low-priority

Status: Open.

Feature

#532 In bigbio/quantms;

· ypriverol opened on May 9, 2025

Does not add second enzyme to Comet search

bugSomething isn't workingSomething isn't working

Status: Open.

#529 In bigbio/quantms;

· MetteBoge opened on May 8, 2025