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ggCaller v1.4.1

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@samhorsfield96 samhorsfield96 released this 24 Sep 13:14
571c521
  • Implements iterative gene calling, allowing genes to be called in first pass, and new genomes to be called against the original set
  • Reimplements gene clustering algorithm to enable iterative clustering, removing multiple passes through clusters with a single greedy pass
  • Adds '--gene-finding-only' option to output gff3 files compatible with Panaroo input
  • Adds intermediate file writing to reduce memory consumption
  • Replace '--data' with '--prev-run' option to allow for iterative updates of gene calls when analysing new genomes
  • Updates unitig annotation pipeline to function with new iterative functionality
  • Updates documentation with changes to iterative gene calling