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299 changes: 299 additions & 0 deletions src/scenicplus.egg-info/PKG-INFO
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Metadata-Version: 2.1
Name: scenicplus
Version: 1.0a1
Summary: SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
Author-email: Seppe De Winter <seppe.dewinter@kuleuven.be>, Carmen Bravo <carmen.bravogonzalezblas@kuleuven.be>
Project-URL: Homepage, https://github.com/aertslab/scenicplus
Project-URL: Documentation, https://scenicplus.readthedocs.io
Project-URL: Repository, https://github.com/aertslab/scenicplus
Project-URL: Changelog, https://github.com/aertslab/scenicplus/releases
Keywords: scATAC,GRN inference,eGRN inference
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: Other/Proprietary License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
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Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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![alt text](docs/images/SCENIC+_Logo_v5.png "SCENIC+")
[![Documentation Status](https://readthedocs.org/projects/scenicplus/badge/?version=development)](https://scenicplus.readthedocs.io/en/development/?badge=development)


# SCENIC+ single-cell eGRN inference

`SCENIC+` is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

## Documentation

Extensive documentation and tutorials are available at [read the docs](https://scenicplus.readthedocs.io/en/development/).

## Installing

To install SCENIC+ (in a Linux environment):

We highly recommend to install SCENIC+ in a new conda environment.

```bash

$ conda create --name scenicplus python=3.11 -y
$ conda activate scenicplus
$ git clone https://github.com/aertslab/scenicplus
$ cd scenicplus
$ git checkout development
$ pip install .

```

## Questions?

* If you have **technical questions or problems**, such as bug reports or ideas for new features, please open an issue under the issues tab.
* If you have **questions about the interpretation of results or your analysis**, please start a Discussion under the Discussions tab.


## References

[Bravo Gonzalez-Blas, C. & De Winter, S. *et al.* (2022). SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks](https://www.biorxiv.org/content/10.1101/2022.08.19.504505v1)
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