Releases: Zaroganos/ZaroPGx
v0.2.3
What's Changed
- One-command bootstrap by @Zaroganos in #5
Full Changelog: v0.2.2...v0.2.3
Release highlights:
- One-command super simple setup implemented
- PharmCAT incorporation enhanced, new functionality unlocked
- Dependencies updated to latest (pharmcat, htslib/sam/bcftools, hapi fhir) and tested
- Database system improved
- Reports enhanced, new section added and formatting improved
- FHIR exporting basic implementation provisionally added
- numerous small bug fixes and improvements
... and more!
Contributors
Assets 2
v0.2.2
What's Changed
PharmCAT JSON output is now parsed, stored, and pulled from the Postgres DB, greatly improving the report content. Drugs and recommendations are now properly displayed.
Misc. other changes.
- docs curation by @Zaroganos in #2
- PharmCAT JSON -> Postgres DB -> Report Generation implemented by @Zaroganos in #3
- Docs and api by @Zaroganos in #4
Full Changelog: v0.2.1...v0.2.2
Contributors
Assets 2
v0.2.1
Full Changelog: v0.2.0...v0.2.1
This minor release is a refinement with minor reworks/dependency upgrades, fixes, and enhancements.
A critical problem has surfaced, namely that nextflow is incompatible with docker compose, at least not without tedious workarounds.
If a solution based on less hacky means, i.e. Sysbox, will work, then the pipeline will function, and indeed have mtDNA-server-2 added to it.
However, this will come at an unfortunate cost: unsupported are baremetal macOS and Windows with WSL and Docker Desktop (WSL with cli docker without docker desktop might work.)
If it is possible to perhaps run these internal nextflow pipelines in a different environment, such as conda, that might just work, too.
Substantial code changes to follow with implementing DB fully, implementing mtDNA-server-2 (if possible as per above), basic FHIR exports, and enhanced report structure.
v0.2.0
Full Changelog: alpha...v0.2.0