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@emdann emdann commented Nov 28, 2022

Added notebook with:

  • functions to split dataset in reference and query simulating mismatch (deletions/insertions) in the query, of different lengths and starts
  • Code to compute "match prediction accuracy" (i.e. in which fraction of bins does the alignment correctly identify a match or a mismatch?)
  • Test on pancreas dataset using 5 genes picked from the CellRank paper.

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emdann commented Dec 12, 2022

Insertion/deletion accuracy results are saved in:

/nfs/team205/ed6/bin/Genes2Genes/notebooks/data/match_accuracy_pancreas.insertion.csv
/nfs/team205/ed6/bin/Genes2Genes/notebooks/data/match_accuracy_pancreas.deletion.csv

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3 participants