Some features inspired by perbase#51

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killercup wants to merge 16 commits into

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feature/for-perbase

Commits on May 9, 2026

add SlimRecord::end_pos_htslib() for htslib-compatible unmapped read spans
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Commits on May 10, 2026

add engine.pileups_into(&mut buf)
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Commits on May 11, 2026

remove keep_unmapped; let filter_raw be the single gate for unmapped reads
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fix tests: use RejectUnmapped customizer in comparison tests
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fix comparison tests: use RejectUnmapped customizer for htslib/noodles parity
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fix compiled comparison tests; 2 unified_reader tests need manual fix
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fix Readers::fetch_into to pass through customize value
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fix: make FilterRawFields.end_pos Option<Pos0>, add RejectUnmapped, document compute-before-filter tradeoff
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refactor: type-level FilterRawFields enums, unified pileup API, AlignmentView slab accessors
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refactor: collapse CigarSlice enum — &[CigarOp] directly via zero-cost transmute
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fix: revert FilterRawFields.cigar to raw &[u8], remove transmute
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fix: replace swap_remove with stable retain in pileup eviction
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perf: shrink CompactOp 16→12 bytes, pack len+op_type into one u32
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Replaced all local RejectUnmapped definitions
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end_pos now htslib-compatible
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Commits on May 12, 2026

maybe cigar not aligned
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