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Taxonomy benchmark#454

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jakobnissen merged 9 commits into
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tax_benchmark
Aug 27, 2025
Merged

Taxonomy benchmark#454
jakobnissen merged 9 commits into
masterfrom
tax_benchmark

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@sgalkina

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A command to benchmark taxonomic annotations in the absense of ground truth used for Figure 3 scatter plots.

@sgalkina sgalkina requested a review from jakobnissen August 26, 2025 13:41
Comment thread vamb/__main__.py Outdated
Comment thread vamb/__main__.py Outdated
Comment thread vamb/__main__.py Outdated
Comment thread vamb/__main__.py Outdated
Comment thread vamb/__main__.py Outdated
Comment thread vamb/__main__.py Outdated
Comment thread vamb/__main__.py
Comment thread vamb/__main__.py Outdated
Comment thread vamb/taxonomy.py Outdated
Comment thread vamb/taxonomy.py
Comment thread vamb/taxvamb_encode.py Outdated
Comment thread vamb/__main__.py Outdated
@sgalkina sgalkina requested a review from jakobnissen August 26, 2025 15:36

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Great addition - I added a small fix for type errors.

@jakobnissen jakobnissen merged commit 8a13cf5 into master Aug 27, 2025
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@jakobnissen jakobnissen deleted the tax_benchmark branch August 27, 2025 09:37
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2 participants