production_2025_05_07

Changelog

Issue #2069

• [#2113] Issue2069 (@kvnthomas98)

Issue #2097

• [#2211] #2097 (@saramsey)

Issue #2098

• [#2119] Bring issue-2098 up to date with master (@saramsey)
• [#2120] Issue 2098 (@saramsey)
• [#2124] #2098 fixing compute_ngd.py (@saramsey)

Issue #2114

• [#2118] #2114 (@saramsey)
• [#2134] #2114 (@saramsey)
• [#2137] Bringing branch issue-2114 up-to-date with most recent commits in master (@saramsey)
• [#2138] Issue 2114 (@saramsey)

Issue #2121

• [#2126] Making issue-2121 up-to-date with latest code in master (@saramsey)
• [#2127] Issue 2121 (@saramsey)

Issue #2122

• [#2131] Issue 2122 (@saramsey)

Issue #2139

• [#2208] Issue2139: Using single pickle file to cache meta_map and smart_api information (@sundareswarpullela)
• [#2215] #2139 (@saramsey)
• [#2228] Issue2139 (@sundareswarpullela)

Issue #2148

• [#2178] Issue 2148 (@saramsey)

Issue #2170

• [#2175] Issue 2170 (@saramsey)
• [#2177] Issue 2170 (@saramsey)

Issue #2171

• [#2173] Issue 2171 (@saramsey)
• [#2174] Merging issue-2171 commits into issue-2170 branch for simplicity of testing (@saramsey)

Issue #2183

• [#2205] Issue 2183 (@saramsey)

Issue #2186

• [#2225] #2186 Open Telemetry Implementation using Jaeger Exporter (@kvnthomas98)

Issue #2203

• [#2219] Only save response if we know which S3 bucket to use #2203 (@amykglen)

Issue #2213

• [#2214] Issue 2213 (@saramsey)

Issue #2217

• [#2218] Issue 2217 (@saramsey)

Issue #2222

• [#2223] #2222 (@saramsey)

Issue #2234

• [#2235] #2234 checking if synonyms are actually strings (@kvnthomas98)

Issue #2242

• [#2246] Issue 2242 (@saramsey)
• [#2247] Issue 2242 (@saramsey)

Issue #2254

• [#2255] Issue2254 (@dkoslicki)

Issue #2259

• [#2266] Attempt 2 for merging master into kg2.9.c branch for issue 2259 (@saramsey)

Issue #2267

• [#2277] issue: 2267 (@mohsenht)

Issue #2272

• [#2273] Adding empty attribute list onto NodeBindings #2272 (@kvnthomas98)

Issue #2329

• [#2330] #2329 Un-refactor xDTD treats (@chunyuma)

Issue #2352

• [#2370] #2352 Improve quality of xCRG Paths (@kvnthomas98)

Issue #2388

• [#2393] Issue2388 (@kvnthomas98)

Issue #2422

• [#2244] #2422 (@saramsey)

Other Changes

Database & Configuration

• [#2136] Fix: second attempt added to download the DBs (@pahmadi8740)
• [#2192] Update config_dbs.json (@edeutsch)
• [#2198] Restore databases (@edeutsch)
• [#2216] Mute debugging (@edeutsch)

Infrastructure & Deployment

• [#2140] Feat: resources are added and tolerations are modified (@pahmadi8740)
• [#2190] Update values.yaml with new node-group (@pahmadi8740)
• [#2193] Fix: reverting back the toleration changes (@pahmadi8740)
• [#2199] Update values.yaml with new toleration and resources (@pahmadi8740)
• [#2260] Add dev to CI/CD (@dkoslicki)
• [#2276] Updated the taint and tolerations (@pahmadi8740)
• [#2318] Updated values.yaml (@pahmadi8740)
• [#2382] Update resource limits for arax and kg2 (@pabbathreddya2)

PathFinder

• [#2241] Path finder (@mohsenht)
• [#2285] Path finder enhancements (@mohsenht)
• [#2286] Add node degree constraint to Path Finder (@mohsenht)
• [#2358] PathFinder v2 (@mohsenht)
• [#2359] Delete redis (@mohsenht)
• [#2433] Pathfinder using ML model (@mohsenht)
• [#2453] Pathfinder V2 (@mohsenht)

Algorithm Improvements

• [#2312] Improve the ranking algorithm (@chunyuma)
• [#2341] Adding Paths through Transcription Factors for xCRG (@kvnthomas98)
• [#2355] Some update (@chunyuma)
• [#2399] Fixing xCRG for KG2.10.1 deployment (@kvnthomas98)

Blocklist Updates

• [#2314] Update general_concepts.json (@dkoslicki)
• [#2403] Update general_concepts.json (@dkoslicki)

Release candidate for August 18, 2023 code freeze

augfreeze-rc

upgrade validator to 3.8.6

TRAPI 1.0 release

trapi1.0_final

#1261

Initial POC software version from November 2017

0.1

remove spurious test case and typo fix