This folder contains material for a full-day workshop introducing Phylogenetic Generalized Least Squares (PGLS), Phylogenetic Mixed Models, the estimation of diversification rates, and teaching how to implement them in the R language.
Phylogenies and Statistics | pdf presentation
R tutorial | Tutorial with examples in R
Data | Files you will need to perform the examples in the tutorial
Solutions to the challenges in the tutorial | Tutorial in R with solutions to the challenges
Presentation on diversification | html presentation
R tutorial | Tutorial with examples in R
Data | Files you will need to perform the examples in the tutorial
The links below might provide additional information of interest.
Luke Harmon's book - Phylogenetic Comparative Methods
Course on Phylogenetic Comparative Methods
Introduction to phylogenies in R - pdf
Reading and making phylogenetic trees in R - pdf
The material was last updated in November 2019.