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Pin numpy to 1.22.3 in environment_BSF.yml and environment_Windows.yml#124

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tnitka wants to merge 6 commits intomainfrom
Environment_fix
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Pin numpy to 1.22.3 in environment_BSF.yml and environment_Windows.yml#124
tnitka wants to merge 6 commits intomainfrom
Environment_fix

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@tnitka
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@tnitka tnitka commented Apr 23, 2024

Fixes #123.

tnitka and others added 2 commits April 23, 2024 14:17
changelog:
- Require hdbscan >= 0.8.29 to resolve installation errors (see: scikit-learn-contrib/hdbscan#565)
- Directly use available pip installable version of snekmer instead of git+github functionality
@christinehc
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christinehc commented May 8, 2024

@tnitka @jjacobson95 I added a specification for newer HDBSCAN versions due to installation errors arising from older versions of HDBSCAN, but have also updated the spec to use pip install snekmer rather than pip install -e git+https://github.com/PNNL-CompBio/Snekmer#egg=snekmer. I recommend these changes be tested before changes are merged into main

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christinehc commented May 28, 2024

Sidenote: HDBSCAN needs to be fixed to hdbscan==0.8.29 (and scikit-learn==1.2.2) due to this bug (see StackOverflow). I have updated this on the background branch but not on this one.

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We should bundle #125 fixes here

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