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v1.2.2

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@PHILIPP111007 PHILIPP111007 released this 24 Aug 13:31
· 116 commits to main since this release
1.2.2
f93b317

MatrixTableConsumer v1.2.2

You can look at the benchmarks.md file, which contains benchmark of my program and bcftools

Now you can filter .vcf files (currently only the && operator is available):

python matrix_table_consumer/vcf_tools.py -filter \
    -o ./data/test_1.vcf \
    -vcf ./data/ALL.chr1.phase3_shapeit2_mvncall_integrated_v5b.20130502.genotypes.vcf.gz \
    -i "QUAL>=90 && AF>=0.00001" \
    -gzip \
    -num_cpu 7

You may donate to matrix_table_consumer project:

  • Ethereum: 0xE2e2D675a3843f4ED211BB93847ad18b0A6fe7c6
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