Differential analysis:
- Differential gene expression analysis: between two conditions
- Metagenomics: differential microbial community
- small RNA (output specificially from TEsmall or any tubular raw expression count data)
Usages: snakemake -s wf-Deseq.smk --use-conda
snakemake pipeline for the DE small RNAs
Requirements: Edit the config file and update below variables:
- Indir
- Outdir
- MetaData
- smallestGroupSize (Smallest number of samples per group)
- Type: "" # specify if it is smallRNAs otherwise keept --> ""