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add hf token to framework CI #1326

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8a60d39
add hf token to framework CI
pstjohn Nov 17, 2025
03bb736
Merge branch 'main' into pstjohn/framework-hf-limiting
pstjohn Nov 24, 2025
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3 changes: 3 additions & 0 deletions .github/workflows/unit-tests-framework.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -217,6 +217,9 @@ jobs:
credentials:
username: ${{ vars.DOCKER_USERNAME }}
password: ${{ secrets.DOCKER_PASSWORD }}
env:
CI: true
HF_TOKEN: ${{ secrets.HF_TOKEN }}
if: needs.build-bionemo-image.result == 'success'
steps:
- name: Checkout repository
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2 changes: 1 addition & 1 deletion sub-packages/bionemo-amplify/src/bionemo/amplify/tokenizer.py
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Expand Up @@ -21,5 +21,5 @@
class BioNeMoAMPLIFYTokenizer(transformers.PreTrainedTokenizerFast, IOMixin): # noqa D101
def __init__(self):
"""A wrapper to make AutoTokenizer serializable for the ESM2 tokenizer."""
other = transformers.AutoTokenizer.from_pretrained("chandar-lab/AMPLIFY_350M", use_fast=True)
other = transformers.AutoTokenizer.from_pretrained("chandar-lab/AMPLIFY_120M", use_fast=True)
self.__dict__.update(other.__dict__)
2 changes: 2 additions & 0 deletions sub-packages/bionemo-amplify/tests/bionemo/amplify/test_convert.py
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Expand Up @@ -13,6 +13,7 @@
# See the License for the specific language governing permissions and
# limitations under the License.

import os
import sys
from pathlib import Path

Expand Down Expand Up @@ -321,6 +322,7 @@ def test_convert_amplify_120M_bf16(tmp_path):
reason="AMPLIFY golden value tests require xformers. Run `pip install -v -U "
"git+https://github.com/facebookresearch/[email protected]#egg=xformers` to enable.",
)
@pytest.mark.skipif(os.getenv("CI", "false") == "true", reason="Skipping larger model test in CI.")
def test_convert_amplify_350M(tmp_path):
model_tag = "chandar-lab/AMPLIFY_350M"
module = biobert_lightning_module(config=AMPLIFYConfig())
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