Skip to content

Conversation

@gaurav
Copy link
Collaborator

@gaurav gaurav commented Dec 19, 2025

Add the ability to conflate identifiers on the fly.

WIP

  • This currently takes 30s for GeneProtein and 60ms for DrugChemical, but we should be able to speed this up quite a bit by downloading the Gzip file instead.
  • In case we can't access stars.renci.org, we should keep a copy of the conflation files in the Docker image.
    • This means we should also store the Biolink Model version.
    • We could potentially store the conflation files in the Helm chart somewhere, but that seems... annoying.

This currently takes 30s for GeneProtein and 60ms for DrugChemical, but
we should be able to speed this up quite a bit.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants