v0.4.0

What's Changed

• [VERSION] Bump version to 0.3.2-dev0 (merge after release) by @github-actions[bot] in #124
• Remove orphan functions and dead plotting/utility code by @ammarcsj in #127
• Add split ion backgrounds and new z-aggregation modes by @ammarcsj in #130
• Add variance predictor module by @ammarcsj in #131
• Add intensity summarization module by @ammarcsj in #132
• Add ICC correction module by @ammarcsj in #133
• Add residual decorrelation module by @ammarcsj in #134
• Wire new aggregation features into cluster and pipeline by @ammarcsj in #135
• Add documentation to residual_decorrelation module by @ammarcsj in #136
• Restore notebook plotting functions removed by dead code cleanup by @ammarcsj in #137
• Fix counting statistics with shorter trees by @ammarcsj in #125
• Merge stacked feature branches into main by @ammarcsj in #139
• Fix failing CI tests by @ammarcsj in #140
• Fix release installer packaging by @ammarcsj in #143
• [VERSION] Bump version to 0.4.0 by @github-actions[bot] in #144

Full Changelog: v0.3.1...v0.4.0

v0.3.1

What's Changed

• Ax 989 add quant readers by @mschwoer in #119
• Pin pandas to <3 by @mschwoer in #122
• Make dask optional by @mschwoer in #120
• make alphamap optional and update installation instructions by @mschwoer in #121

Full Changelog: v0.3.0...v0.3.1

v0.3.0

What's Changed

• [VERSION] Bump version to 0.2.1-dev0 (merge after release) by @github-actions[bot] in #111
• Outlier proteins by @ammarcsj in #113
• Developer readme by @ammarcsj in #114
• Enhanced visualization controls and tests by @ammarcsj in #115
• update developer readme by @ammarcsj in #116
• Add downloads to windows installer by @ammarcsj in #91
• [VERSION] Bump version to 0.3.0 by @github-actions[bot] in #117

Full Changelog: v0.2.0...v0.3.0

v0.2.0

What's Changed

• Improved outlier filtering and fragment level selection, this should substantially improve differential quantification performance in challenging scenarios. Example notebook for tree visualization by @ammarcsj in #109
• [VERSION] Bump version to 0.2.0 by @github-actions[bot] in #110

Full Changelog: v0.1.8...v0.2.0

v0.1.8

What's Changed

• set alphabase to 1.6 to enable parquet by @ammarcsj in #95
• Fix valid value filtering options in GUI by @ammarcsj in #100
• Update ptm processing by @ammarcsj in #25

Full Changelog: v0.1.7...v0.1.8

v0.1.7

What's Changed

• Fix issues with MaxQuant and Fragpipe tables #88
• Fix issues with medianref condition when displaying plots in GUI #89
• remove titlefont parameter by @ammarcsj in #78
• [VERSION] Bump version to 0.1.7-dev0 (merge after release) by @github-actions in #77
• Cleanup by @ammarcsj in #79
• Remove sequence dbs by @ammarcsj in #80
• add citation by @mschwoer in #83
• add automated AI code review workflow for PRs labeled 'code-review' by @mschwoer in #81
• Add docker container by @mschwoer in #57
• fix binder link by @mschwoer in #87
• trigger tests on push to main by @ammarcsj in #84
• [VERSION] Bump version to 0.1.7 by @github-actions in #92

Full Changelog: v0.1.6...v0.1.7

v0.1.6

Initial release