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NanoQuRe — Nanopore Sequencing Quality Control in R

NanoQuRe is an R package for quality control of Oxford Nanopore sequencing data. It generates interactive HTML reports directly from sequencing_summary.txt files produced by Dorado, making quality assessment faster and more intuitive.

Key Features

• Accepts one or multiple sequencing_summary.txt files as input
• Generates interactive plots and summary tables
• Computes key QC metrics: N50, pass rate, mean Q-score, translocation speed
• Designed for Nanopore sequencing data (Dorado basecaller)
• Simple, single-function report generation

Quick navigation table

Page	Description
Installation	How to install NanoQuRe
Input Data Format	Expected sequencing summary columns
Quick Start	Minimal working example
Function Reference	Reference for all exported functions
Generating a Report	Workflow