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Test RunResults using a model with a dFBA submodel, and check on dfba_reaction_fluxes

Status: Open.

#115 In KarrLab/wc_sim;

· artgoldberg opened on Dec 26, 2020

refactor rate law and enabled reaction calculations in DynamicSubmodel so eval_dynamic_rate_laws can use them

Status: Open.

#114 In KarrLab/wc_sim;

· artgoldberg opened on Dec 26, 2020

Remove use of typing module in message_types.py when earliest supported Python version >= 3.9

Status: Open.

#112 In KarrLab/wc_sim;

· artgoldberg opened on Oct 28, 2020

Handle ambient species, which are used in reactions but have "infinite" supply

enhancement

Status: Open.

#111 In KarrLab/wc_sim;

· artgoldberg opened on Sep 24, 2020

Support simulation of large models in modest amounts of RAM

enhancement

Status: Open.

#110 In KarrLab/wc_sim;

· artgoldberg opened on Sep 21, 2020

WC Sim container for BioSimulators

enhancement

Status: Open.

#109 In KarrLab/wc_sim;

· artgoldberg opened on Sep 18, 2020

Report invalid positive reaction rates in ODE submodels

enhancement

Status: Open.

#108 In KarrLab/wc_sim;

· artgoldberg opened on Sep 11, 2020

Dynamically reduce the time steps of dFBA submodels

enhancement

Status: Open.

#107 In KarrLab/wc_sim;

· artgoldberg opened on Sep 11, 2020

Improve performance of WC expression evaluation

Status: Open.

#102 In KarrLab/wc_sim;

· artgoldberg opened on Sep 2, 2020

Optimization for reaction network dependency analysis

enhancement

Status: Open.

#101 In KarrLab/wc_sim;

· artgoldberg opened on Jul 16, 2020

Investigate possible problem with SsaTestCase 00003

bug

Status: Open.

#100 In KarrLab/wc_sim;

· artgoldberg opened on Jul 3, 2020

Properly handle RandomStates

enhancement

Status: Open.

#99 In KarrLab/wc_sim;

· artgoldberg opened on Jul 1, 2020