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Allow to retrieve original quality scores during BAM -> FASTQ

Status: Open.

#28 In IARCbioinfo/alignment-nf;

· mfoll opened on Apr 23, 2020

Add cram support

Status: Open.

#27 In IARCbioinfo/alignment-nf;

· mfoll opened on Apr 23, 2020

Add emit original BQ option when using BQSR

Status: Open.

#26 In IARCbioinfo/alignment-nf;

· mfoll opened on Apr 23, 2020

Use faster BAM -> FASTQ method when doing realignment

Status: Open.

#25 In IARCbioinfo/alignment-nf;

· mfoll opened on Apr 19, 2019

Re-evaluate SAM/BAM processing tools

Status: Open.

#23 In IARCbioinfo/alignment-nf;

· mfoll opened on Dec 21, 2018

Enhancement - input of single fastq

Status: Open.

#17 In IARCbioinfo/alignment-nf;

· V-Catherine opened on Aug 30, 2017