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all_chain_plotting#105

Merged
BadPrograms merged 6 commits intov3.xfrom
all_chains_histogram
Feb 26, 2026
Merged

all_chain_plotting#105
BadPrograms merged 6 commits intov3.xfrom
all_chains_histogram

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Added easy access to the chain histogram

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codecov Bot commented Feb 24, 2026

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 87.05%. Comparing base (5b94326) to head (b6e0837).
⚠️ Report is 13 commits behind head on v3.x.

Additional details and impacted files
@@            Coverage Diff             @@
##             v3.x     #105      +/-   ##
==========================================
+ Coverage   86.97%   87.05%   +0.08%     
==========================================
  Files          20       20              
  Lines        1888     1900      +12     
==========================================
+ Hits         1642     1654      +12     
  Misses        246      246              

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@leoguignard leoguignard left a comment

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small typo and precision on the description

Comment thread src/lineagetree/plot.py Outdated
Comment on lines +762 to +765
with_leaves : bool, optional
Include the chains that contain leaves in the histogram, by default False
with_roots : bool, optional
Include the chains that contain roots in the histogram, by default False
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They are not optional, they have default values, there is a difference

Comment thread src/lineagetree/plot.py Outdated
with_roots : bool, optional
Include the chains that contain roots in the histogram, by default False
bins : int, optional
Bins of tghe histogram, if none they are set automatically, by default None
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typo tghe

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also "if None ..."

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Can you fix the conflicts to enable the merge please?

@BadPrograms BadPrograms merged commit 0b127f6 into v3.x Feb 26, 2026
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@BadPrograms BadPrograms deleted the all_chains_histogram branch March 25, 2026 21:20
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2 participants